Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0277
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81029-4|CAB02700.1|  300|Caenorhabditis elegans Hypothetical pr...    97   6e-21
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF125459-16|AAD12835.1|  578|Caenorhabditis elegans Hypothetical...    28   4.4  
Z95559-8|CAB54437.1|  720|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z46933-1|CAA87034.1|  142|Caenorhabditis elegans Hypothetical pr...    27   7.6  

>Z81029-4|CAB02700.1|  300|Caenorhabditis elegans Hypothetical
           protein C01A2.5 protein.
          Length = 300

 Score = 97.5 bits (232), Expect = 6e-21
 Identities = 46/145 (31%), Positives = 76/145 (52%), Gaps = 2/145 (1%)
 Frame = +2

Query: 161 RSNEKEARTDKDAERSFKWRNCALSQQILQEPIVACSLGRLYSKSSVLEALLDKE-TRPE 337
           +  +K+ + DK  + + KWRNC L+Q  L+ P++AC  G+LY+K  V+ ++L K  ++  
Sbjct: 16  KERKKKEKLDKHVKNATKWRNCQLTQLPLKRPVIACRFGKLYNKEDVINSILSKTISKSA 75

Query: 338 SINHXXXXXXXXXXXXXXXPAYVPTD-HTDGTFDNGSAPYICPISGLEMTGKFRFVFLWS 514
           S +H                 +   D   D   D     +ICPI+ + M G   F+  W 
Sbjct: 76  SASHIKGPKDFVELKLTLNKDFKRGDVKGDDYNDVNQTEFICPITNVPMNGIQSFLVNWQ 135

Query: 515 CGCVLAERALKEVRQNLCHMCQQPF 589
           CGCV +E+A +EV+ + CH+C  P+
Sbjct: 136 CGCVYSEKAQQEVKSSNCHVCGGPY 160



 Score = 36.7 bits (81), Expect = 0.012
 Identities = 15/24 (62%), Positives = 20/24 (83%)
 Frame = +3

Query: 120 MGCDGGTIPRRDELVRMKKKPEQI 191
           MG DGGTIP+R ELV+ +KK E++
Sbjct: 1   MGADGGTIPKRCELVKERKKKEKL 24


>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical protein
            C05C9.3 protein.
          Length = 1225

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 533  QQAHSHSSREK-QNEIFQSSPSH**GRCKEHSHYQMSHQYGL*EHMQ 396
            QQ  +H  R+  Q E+FQS P H     + H H Q ++Q    +H Q
Sbjct: 1114 QQNQNHHVRQAVQEEVFQSFPRH---DVQRHIHGQTNYQQNQRQHSQ 1157


>AF125459-16|AAD12835.1|  578|Caenorhabditis elegans Hypothetical
           protein Y25C1A.1 protein.
          Length = 578

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = -1

Query: 161 ELIASRNCTAIT-THFVKNMCFFTISLSKTKPTLCYF 54
           E+I   N  ++  THF K   F  +S S+T P  C F
Sbjct: 356 EIIECDNMNSVAITHFAKGAAFVPMSDSQTAPVWCKF 392


>Z95559-8|CAB54437.1|  720|Caenorhabditis elegans Hypothetical
           protein Y41E3.16 protein.
          Length = 720

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 128 TTHFVKNMCFFTISLSKTKPTLCYFCLEFLL 36
           TT F+KN   F+  +  + PT+ +F  EF L
Sbjct: 617 TTSFLKNKIIFSTRIVISSPTIYFFFSEFCL 647


>Z46933-1|CAA87034.1|  142|Caenorhabditis elegans Hypothetical
           protein F34H10.1 protein.
          Length = 142

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +2

Query: 146 STR*ARSNEKEARTD---KDAERSFKWRNCALSQQILQEPIVACSLG 277
           +T  +R  ++E  TD    +AE+S K  NCA +   LQ  +  C LG
Sbjct: 4   ATNNSREEKEEETTDVCSANAEKSTKILNCAETHFTLQRRLHFCQLG 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,054,660
Number of Sequences: 27780
Number of extensions: 284241
Number of successful extensions: 1047
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)