Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0277
         (593 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   0.56 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   0.56 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   0.56 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   5.2  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.9  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   9.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   9.1  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 536 RALKEVRQNLCHMCQQP 586
           R LKE   N+C +C++P
Sbjct: 209 RRLKETYSNMCALCEKP 225


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 536 RALKEVRQNLCHMCQQP 586
           R LKE   N+C +C++P
Sbjct: 209 RRLKETYSNMCALCEKP 225


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 536 RALKEVRQNLCHMCQQP 586
           R LKE   N+C +C++P
Sbjct: 209 RRLKETYSNMCALCEKP 225


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
 Frame = -3

Query: 111 KYVFF-HYFFIQDKTNVVLF 55
           KY+ F  +FFI+  TNV+ F
Sbjct: 8   KYINFDRFFFIEGMTNVLDF 27


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -2

Query: 106 CVFSLFLYPRQNQRCVIFALNFYY 35
           C+  L  YP  +Q C +   ++ Y
Sbjct: 161 CMMDLHYYPLDSQNCTVEIESYGY 184


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 116 VKNMCFFTISLSKTKPTLCYF 54
           V  +C+FT  ++  +  LC F
Sbjct: 160 VAEVCYFTAHVTHPRHRLCVF 180


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 522 QPQLQRKTKRNFPVISKPLIGQM*GALPLSNVPS 421
           QP ++  T++ FP +   L  Q    L LS V S
Sbjct: 452 QPSIRTYTQQQFPYVHDTLQIQPQEQLTLSKVTS 485


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,381
Number of Sequences: 438
Number of extensions: 3256
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)