Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0277
(593 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g58020.1 68418.m07260 expressed protein contains PF04641: Pro... 86 1e-17
At2g04620.1 68415.m00470 cation efflux family protein potential ... 31 0.44
At1g61620.1 68414.m06943 expressed protein contains Pfam profile... 30 1.3
At1g04510.1 68414.m00442 transducin family protein / WD-40 repea... 29 1.8
At1g54540.1 68414.m06220 hypothetical protein 29 2.3
At5g37460.1 68418.m04508 hypothetical protein contains Pfam PF04... 28 4.1
At5g67210.1 68418.m08472 expressed protein contains Pfam profile... 27 7.1
At4g27595.1 68417.m03964 protein transport protein-related low s... 27 7.1
At2g40570.1 68415.m05005 initiator tRNA phosphoribosyl transfera... 27 7.1
At1g53400.1 68414.m06053 expressed protein 27 7.1
At5g51080.1 68418.m06331 RNase H domain-containing protein low s... 27 9.4
At1g33970.1 68414.m04212 avirulence-responsive protein, putative... 27 9.4
>At5g58020.1 68418.m07260 expressed protein contains PF04641:
Protein of unknown function, DUF602
Length = 354
Score = 86.2 bits (204), Expect = 1e-17
Identities = 49/139 (35%), Positives = 74/139 (53%), Gaps = 1/139 (0%)
Frame = +2
Query: 164 SNEKEARTDKDAERSFKWRNCALSQQILQEPIVACSLGRLYSKSSVLEALLDKETRPESI 343
+ +K + D + +R KW NCALS + L EP V LG L++K ++ ALL K P+
Sbjct: 104 AEKKPDKVDPNEQRLSKWLNCALSNEPLAEPCVIDLLGNLFNKEVLVHALLSKRL-PKQF 162
Query: 344 NHXXXXXXXXXXXXXXXPAYVPTDHTDGTF-DNGSAPYICPISGLEMTGKFRFVFLWSCG 520
++ P +DG+ D SA + CP+SGLE GK++F L CG
Sbjct: 163 SYIKGLKDMVNIKL------TPVAGSDGSSQDTTSAQFQCPVSGLEFNGKYKFFALRGCG 216
Query: 521 CVLAERALKEVRQNLCHMC 577
V++ +ALKEV+ + C +C
Sbjct: 217 HVMSAKALKEVKSSSCLVC 235
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 536 SQQAHSHSSREKQNEIFQSSPSH**GRCKEHSHYQMSHQY 417
+++ H HS K E Q S SH EH H+ SH +
Sbjct: 567 NEEHHQHSDSHKHEEHHQHSDSHKHEEHHEHDHHHHSHSH 606
>At1g61620.1 68414.m06943 expressed protein contains Pfam profile:
PF01363 FYVE zinc finger
Length = 310
Score = 29.9 bits (64), Expect = 1.3
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +2
Query: 452 YICPISGLEMTGKFRFVFLWSCGCVLAERALKEVR--QNLCHMCQQP 586
YICP + +T V L SCG V ++ ++ +C +C +P
Sbjct: 219 YICPSCKVTLTNTMSLVALSSCGHVFCKKCAEKFMPVDKVCLVCDKP 265
>At1g04510.1 68414.m00442 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cell cycle control protein cwf8 (SP:O14011)
[Schizosaccharomyces pombe (Fission yeast)]
Length = 523
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +2
Query: 221 NCALSQQILQEPIVACSLGRLYSKSSVLEALLD 319
NCA+S ++ +EP+V+ G LY K + + D
Sbjct: 2 NCAISGEVPEEPVVSKKSGLLYEKRLIQTHISD 34
>At1g54540.1 68414.m06220 hypothetical protein
Length = 239
Score = 29.1 bits (62), Expect = 2.3
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -1
Query: 323 PCQVVPQE-RNFCCKVFQDCMPLLVLVVFA 237
P V+P + RN CCK+F + LLV+ + A
Sbjct: 38 PPPVIPSKNRNMCCKIFCWVLSLLVIALIA 67
>At5g37460.1 68418.m04508 hypothetical protein contains Pfam PF04510
: Family of unknown function (DUF577)); common family
comprised of At5g37410, At5g37400, At5g37920,
At5g37460, At5g37650, At5g37470, At5g37420, At5g37430
Length = 622
Score = 28.3 bits (60), Expect = 4.1
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Frame = -1
Query: 296 NFCCKVFQDCMPLLVLVVFAARAHNYAT*NFFQHLYLFWLLFHSNELIASRNC----TAI 129
NFC F +C+ L+ L ++ +++ F LYL S L RNC + +
Sbjct: 45 NFCANNFPNCLTLMFLKLYRHSSNDVIR---FHSLYLL-----SETLAVFRNCNIKLSRV 96
Query: 128 TTHFVKNMCFFTISLSKTK 72
H +K + +++ +TK
Sbjct: 97 ALHEIKPLVIECLTMQETK 115
>At5g67210.1 68418.m08472 expressed protein contains Pfam profile
PF04669: Protein of unknown function (DUF579)
Length = 317
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = -1
Query: 209 NFFQHLYLFWLLFHSNELIASRNCTAITTHFVKNMCFFTISLSKTKPTLCYFCLEFLLRY 30
+FF +L LL+ ++ +I+S+N +A + V N T ++S+ T L + R
Sbjct: 34 SFFTIAFLLTLLYTTDSIISSKNNSATVSSAV-NSAVTTATISQLPTTAINAMLHYASRS 92
Query: 29 IKSY 18
SY
Sbjct: 93 NDSY 96
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +2
Query: 200 ERSFKWRNCALSQQILQEPIVACSLGRLYSKSSVLEALLDKETRPESI 343
E+ + +N A + L+E V+ S+ ++ S V E+L+DKET+ ++I
Sbjct: 620 EKEDELKNTAAENRKLREMEVS-SIDKIDQLSKVKESLVDKETKLQNI 666
>At2g40570.1 68415.m05005 initiator tRNA phosphoribosyl transferase
family protein contains Pfam profile: PF04179 initiator
tRNA phosphoribosyl transferase
Length = 521
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 439 WECSLHLPY*WLGDDWKISFCFSLELW 519
W+CSLHLP W+ + + S L+ W
Sbjct: 168 WDCSLHLPL-WVSNTERASIEARLDEW 193
>At1g53400.1 68414.m06053 expressed protein
Length = 114
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +3
Query: 120 MGCDGGTIPRRDELVRMKKKPEQIKMLKEVSSGVIVRSRSKYY 248
MGC G T + D V+ +KP+ K + ++ +++ R +++
Sbjct: 1 MGCAGSTQSQADGSVKKIRKPKPWKHTQPITKAELMKLREEFW 43
>At5g51080.1 68418.m06331 RNase H domain-containing protein low
similarity to GAG-POL precursor [Oryza sativa (japonica
cultivar-group)] GI:5902445; contains Pfam profile
PF00075: RNase H
Length = 322
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 158 LIASRNCTAITTHFVKNMCFFTISLSKTKP 69
L+ R + +T+H N CF+T S KP
Sbjct: 13 LVLFRKSSYVTSHIPWNQCFYTSLKSSLKP 42
>At1g33970.1 68414.m04212 avirulence-responsive protein, putative /
avirulence induced gene protein, putative / AIG protein,
putative similar to SP|P54120 AIG1 protein {Arabidopsis
thaliana}; contains Pfam profile PF04548: AIG1 family
Length = 342
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/52 (23%), Positives = 26/52 (50%)
Frame = +3
Query: 126 CDGGTIPRRDELVRMKKKPEQIKMLKEVSSGVIVRSRSKYYKNQ*WHAVLED 281
CD + ++ KK EQ++ L + V+ ++ K Y ++ +H + E+
Sbjct: 180 CDNRLVLFNNKTTDKVKKAEQVQKLLSLVESVVKQNNGKPYSDELFHELQEE 231
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,990,035
Number of Sequences: 28952
Number of extensions: 250949
Number of successful extensions: 860
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 835
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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