Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0274
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    28   1.3  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    27   2.3  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   9.1  

>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
 Frame = -2

Query: 621 YPLQITPLRYIIQSVNEIHYHVMFGIKL*YFIKYRSGFGETVISKSQTNHL*Y--VNYIY 448
           + L   PLR I +  N  HYH++ G+ L YFI Y        I   + NHL +  V + +
Sbjct: 143 FSLATMPLRNIFK--NCAHYHLLSGLFLAYFI-YGPWHANDYI---KPNHLLFLIVGWAF 196

Query: 447 S-LS*FQLFIIIR 412
           + LS F+  II+R
Sbjct: 197 AVLSNFRTHIILR 209


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 305 ETTVFNIFRNYLKQKPE 355
           +T V N FR YL+QKPE
Sbjct: 219 KTKVKNYFRTYLRQKPE 235


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 132  K*TISSSIF-FKCYYYSK*YIRDTSLLKRFAKXK 34
            K T+  +++ F CY++ K  ++ TSL+  + K K
Sbjct: 1355 KATVRKNLWMFACYFWPKEEVKYTSLISMYEKMK 1388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,229,658
Number of Sequences: 5004
Number of extensions: 39548
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)