Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0274
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-12|CAM33509.1|  108|Caenorhabditis elegans Hypothetical...    28   4.9  
AL110478-9|CAB54343.2|  113|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z49131-1|CAA88974.1|  122|Caenorhabditis elegans Hypothetical pr...    27   8.5  

>AL110478-12|CAM33509.1|  108|Caenorhabditis elegans Hypothetical
           protein Y26D4A.17 protein.
          Length = 108

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 499 CFAKTAPVFDKISQFY 546
           CF K   +FDKI+QFY
Sbjct: 38  CFEKVKKIFDKINQFY 53


>AL110478-9|CAB54343.2|  113|Caenorhabditis elegans Hypothetical
           protein Y26D4A.5 protein.
          Length = 113

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 499 CFAKTAPVFDKISQFY 546
           CF K   +FDKI+QFY
Sbjct: 43  CFEKVKKIFDKINQFY 58


>Z49131-1|CAA88974.1|  122|Caenorhabditis elegans Hypothetical
           protein ZC373.2 protein.
          Length = 122

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 126 FISHARRMCVCIFN*FNIN 182
           FIS+ RR CVC FN  N N
Sbjct: 74  FISNDRRTCVCCFNNTNRN 92


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,099,208
Number of Sequences: 27780
Number of extensions: 213551
Number of successful extensions: 367
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)