Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0268
         (632 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0356 + 3131214-3132443,3132584-3132778,3132892-3132972,313...    32   0.33 
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118...    32   0.33 
03_05_0264 - 22510997-22511012,22511641-22511709,22511783-225119...    31   1.0  
08_02_1144 + 24670224-24670607,24670723-24670928,24671211-246713...    29   2.3  
09_04_0588 - 18789971-18790000,18790334-18790507,18791470-187919...    29   4.1  
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336...    28   5.4  
05_02_0034 + 5856165-5856183,5858845-5859173,5859275-5859277,585...    28   5.4  

>08_01_0356 +
           3131214-3132443,3132584-3132778,3132892-3132972,
           3133324-3133383,3133466-3133560,3133660-3133816,
           3133896-3134021,3134398-3134478,3134557-3134647,
           3134735-3134868,3135068-3135136,3135219-3135308,
           3135405-3135508,3135594-3135762,3136066-3136134
          Length = 916

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +1

Query: 13  ARGLVK---NSLKSPNKIQNVTFTTAKTLKGSHGERTMALQPSRWQWHKFKDMLH 168
           A+ +VK   +SLK  NK   +   T KT+K S   +TM + P      K+  ++H
Sbjct: 325 AKNIVKKSPSSLKKDNKKMKMKMKTKKTMKNSQFSKTMKVPPGSGGGQKWTTLVH 379


>01_05_0740 -
           24809951-24810394,24810622-24810700,24811651-24811809,
           24812083-24812246,24812436-24812624,24813151-24813408,
           24813463-24813951,24814062-24814262,24814368-24814639,
           24814661-24814685,24814776-24814937,24815065-24815104,
           24815244-24815353,24815812-24815898,24816013-24816507
          Length = 1057

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +1

Query: 55  IQNVTFTTAKTLKG-SHGERTMALQPSRWQWHKFKDMLHFYMMVGLI 192
           ++NV    A+ L   + GE  +AL+   W+WH F+D+ H Y M G +
Sbjct: 526 LENVIKFPAEVLTPLTAGEIPVALK-QEWKWHLFEDVKHLYHMNGTL 571


>03_05_0264 -
           22510997-22511012,22511641-22511709,22511783-22511931,
           22512235-22512330,22512853-22512981,22513216-22513494,
           22513983-22514069
          Length = 274

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 16/81 (19%), Positives = 37/81 (45%)
 Frame = +1

Query: 40  KSPNKIQNVTFTTAKTLKGSHGERTMALQPSRWQWHKFKDMLHFYMMVGLIPAGALIFYC 219
           ++P    +  +  AK  +   G++   L   RW WH+F   +  ++++ ++ +   +  C
Sbjct: 105 RAPPSSVDSPYVRAKQAQDILGQK---LYKKRWDWHRFG--VKLFLLISILLSFCFLELC 159

Query: 220 NVFIGPAQLTPIPEGYTPKYW 282
           N+ + P  +   P    P +W
Sbjct: 160 NLNVFPV-IEKDPNKAVPLFW 179


>08_02_1144 +
           24670224-24670607,24670723-24670928,24671211-24671310,
           24671539-24672864
          Length = 671

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 12/22 (54%), Positives = 19/22 (86%)
 Frame = -3

Query: 564 KSISLILVVITNTVIQFITGSL 499
           +S+SL+L +IT+ ++ FITGSL
Sbjct: 289 ESLSLVLDIITDELVAFITGSL 310


>09_04_0588 -
           18789971-18790000,18790334-18790507,18791470-18791954,
           18792912-18793266
          Length = 347

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -3

Query: 177 HVKVQHILKFVPLPSGWLQCHCSFSMTAF*GF 82
           H K QH+L FV  P G+L+C C     +  GF
Sbjct: 106 HPKHQHLLFFVK-PGGFLRCKCDICGKSVKGF 136


>06_01_0474 -
           3362734-3362827,3363179-3363366,3363458-3363700,
           3363820-3364098,3364189-3364386,3364475-3365110,
           3365209-3365463,3365579-3365685,3365770-3369566,
           3369677-3370166,3370918-3371308,3371481-3371573,
           3371687-3371810,3372544-3372791
          Length = 2380

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 358 FMHFLDEEQQRIKLRALEKEIIKKM-AERQDYQAYYYKPMVNKYLRMNK 501
           F H  +   ++++L      +I  +  E  D  A+YY P++N     NK
Sbjct: 327 FPHLYNNRPRKVRLGVYHTPMIMYIKTEDPDLPAFYYDPLINPITSTNK 375


>05_02_0034 +
           5856165-5856183,5858845-5859173,5859275-5859277,
           5859440-5859517,5859623-5860090,5860378-5860437,
           5860442-5860666,5860791-5860952,5861502-5861870,
           5861950-5863390,5863598-5863701,5863744-5863779,
           5863780-5863977,5864275-5864538
          Length = 1251

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 304 TRFIARYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKK 429
           T+   + + N P  DY +F H  DE+     +  +EK++I K
Sbjct: 83  TQTCRKSLRNRPPIDYSRFEHISDEDSD---VEIVEKDVIAK 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,209,213
Number of Sequences: 37544
Number of extensions: 407703
Number of successful extensions: 879
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)