Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0268
         (632 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36410| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.0  
SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45)          30   1.8  
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            29   2.4  
SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)                     29   4.1  
SB_58977| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_47175| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_11195| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_41854| Best HMM Match : FA_hydroxylase (HMM E-Value=2.8)            27   9.6  
SB_24448| Best HMM Match : Extensin_2 (HMM E-Value=1.3)                27   9.6  
SB_41425| Best HMM Match : DCX (HMM E-Value=8.6e-06)                   27   9.6  
SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_36410| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 311

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
 Frame = +1

Query: 259 EGYTPKYWEYHRHPITRFIAR---YIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKK 429
           E  +P  W  H++ +     R   YI    + DY+ F HF +  +   + R+L K+ +KK
Sbjct: 21  EDDSPIDWSEHKYTLDHLFFRDNDYIKRGTE-DYKDFWHFFERYESFQRKRSLSKKDVKK 79


>SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1170

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 236 RRN*HLSLKDIRPNTGSTTAIQSPDLLLAIFTTIHNRIMRNLCISLMKN 382
           RR   L L D+R N+  T  ++S   L  ++       + NLC+SL+++
Sbjct: 491 RRLISLDLSDVRLNSIETATLRSAGQLAVLYVLAGGLGLNNLCVSLVRS 539


>SB_46226| Best HMM Match : Ion_trans (HMM E-Value=1.4013e-45)
          Length = 727

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +1

Query: 160 MLHFYMMVGLIPAGALIFYCNVFIGPAQLTPIPEGY 267
           +L F++++G++   +LIFYC   I   +   IP  +
Sbjct: 432 LLIFFLLIGVVLFASLIFYCEKKIPGTKFVDIPSSF 467


>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 247 TPIPEGYTPKYWEYHRHPITRFIARYIHNNPQ 342
           TP+P  +TP+     R PI  +    +HN+P+
Sbjct: 282 TPLPAYFTPRVIHSPRTPIPAYFTPRVHNSPR 313


>SB_51904| Best HMM Match : CH (HMM E-Value=0.0058)
          Length = 1187

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/43 (27%), Positives = 28/43 (65%)
 Frame = +1

Query: 346  DYEKFMHFLDEEQQRIKLRALEKEIIKKMAERQDYQAYYYKPM 474
            DY++ +  +D+E+ R++ R L+++  K+  +R++ +A   K M
Sbjct: 905  DYDEILRSVDDERNRVQ-RLLDEDEAKRKRQREEEEAKRKKKM 946


>SB_58977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 206

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/64 (28%), Positives = 33/64 (51%)
 Frame = +1

Query: 307 RFIARYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKKMAERQDYQAYYYKPMVNKY 486
           R +A+ + +   +DY + +   D+E++R +    EK+  ++ AER+  QA   K  V K 
Sbjct: 31  RSLAQTLRDEQDEDYRRSLQ-ADQEKERRRREEQEKKQKEEEAERRKKQAILEKLEVIKM 89

Query: 487 LRMN 498
              N
Sbjct: 90  ATNN 93


>SB_47175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1088

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 400 RALEKEIIKKMAERQDYQAYYYKPMVNKYLRMNKRTGDELYNR 528
           RA  K + +  A R++  A+Y + +  KYL  N+R  +E  NR
Sbjct: 141 RARVKALAEAKAAREE--AHYERLIAKKYLERNEREAEEEINR 181


>SB_11195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 596

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 1   LQESARGLVKNSLKSPNKIQNVTFTTAKTLKGSHGERTMA 120
           L  S + L  + + +PN++QNVT    K ++GS  +   A
Sbjct: 247 LPPSLKQLADSRILNPNQLQNVTSLAKKKVRGSQEKSNRA 286


>SB_41854| Best HMM Match : FA_hydroxylase (HMM E-Value=2.8)
          Length = 476

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
 Frame = +1

Query: 241 QLTPIPE-GYTPKYWEYHRHPITRFIARY--IHNNPQQDY 351
           Q T  P  GY   Y+  HR P T +   Y  +H +P   Y
Sbjct: 410 QTTSTPTTGYIDTYYRVHRSPTTGYFDTYYRVHRHPTTGY 449


>SB_24448| Best HMM Match : Extensin_2 (HMM E-Value=1.3)
          Length = 282

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +1

Query: 319 RYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKKMAERQDYQAYYYKPMVNKY 486
           +YI+N     Y  +   + +E+  +KL    K     M  R  +  Y Y P  +KY
Sbjct: 53  KYIYNPKTHKY-CYGRIIPKEKHCVKLPRCGKRFYNPMKYRCAHNKYIYNPKTHKY 107



 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/56 (26%), Positives = 24/56 (42%)
 Frame = +1

Query: 319 RYIHNNPQQDYEKFMHFLDEEQQRIKLRALEKEIIKKMAERQDYQAYYYKPMVNKY 486
           +YI+N     Y  +   + + +Q +KL    K     M  R  +  Y Y P  +KY
Sbjct: 141 KYIYNPKTHKY-CYGRIIPKREQCLKLPRCGKRFYNPMKYRCAHNKYIYNPKTHKY 195


>SB_41425| Best HMM Match : DCX (HMM E-Value=8.6e-06)
          Length = 1098

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 251  LSLKDIRPNTGSTTAIQSPDLLLAIFTTIHNRIMRN 358
            +S  D+  +TGS T +   D+L++  +T   R++RN
Sbjct: 1033 MSFLDVLVSTGSATLMSCLDVLVSTGSTTRLRVLRN 1068


>SB_22067| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 705

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +2

Query: 251 LSLKDIRPNTGSTTAIQSPDLLLAIFTTIHNRIMRN 358
           +S  D+  +TGS T +   D+L++  +T   R++RN
Sbjct: 81  MSFLDVLVSTGSATLMSCLDVLVSTGSTTRLRVLRN 116


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,066,260
Number of Sequences: 59808
Number of extensions: 471822
Number of successful extensions: 1279
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1043
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)