Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0268
         (632 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.35 
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.5  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   7.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.8 bits (54), Expect = 0.35
 Identities = 16/67 (23%), Positives = 31/67 (46%)
 Frame = -3

Query: 333 VVNIASNKSGDWMAVVLPVFGRISFRDRCQLRRPNEYVTVEYKGTGRYKSNHHVKVQHIL 154
           + N+A+  SGD+  V       + +  + Q++ P  ++ VE       + N HV +    
Sbjct: 676 ITNLAAEHSGDYTCVAANPAAEVRYTAKLQVKVPPRWI-VEPTDVS-VERNKHVALHCQA 733

Query: 153 KFVPLPS 133
           + VP P+
Sbjct: 734 QGVPTPT 740


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 5/17 (29%), Positives = 13/17 (76%)
 Frame = +1

Query: 133 RWQWHKFKDMLHFYMMV 183
           +W  HK K+++ +Y+++
Sbjct: 278 KWFLHKMKNIIDYYLVL 294



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +2

Query: 461 TINRWSTNTYV*IREPVMNCITVLVM 538
           ++  W    Y  +R+   NCITV  M
Sbjct: 36  SLKGWKEVEYEVVRDAYDNCITVCNM 61


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 213 EYKGTGRYKSNHHVKVQHI 157
           EYK   RY   H+V+ +H+
Sbjct: 260 EYKKDRRYDQLHNVEEKHL 278


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = -2

Query: 136 IWMAAVPLFF 107
           IW+A VPL+F
Sbjct: 860 IWLAFVPLYF 869


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,093
Number of Sequences: 438
Number of extensions: 5019
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18949215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)