Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0262
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    27   3.5  
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe...    26   6.1  
SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|c...    26   6.1  
SPCC965.11c |||amino acid transporter |Schizosaccharomyces pombe...    26   6.1  
SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni...    25   8.0  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   8.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   8.0  

>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 636 SKSEDLTLPILFLWKQNFP 692
           SK+EDL  P++F+   NFP
Sbjct: 398 SKNEDLAHPVVFIGATNFP 416


>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1465

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = +2

Query: 47  WYIYWCFCQSYNLLLCMLWFSY 112
           W++YW + +S ++ L +L+F +
Sbjct: 888 WHVYWMYFKSCSIGLILLYFFF 909


>SPAC29B12.14c |||purine transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 159 GSNLYKPYDCIKSILLYENH 100
           G N++ P D +KS L + NH
Sbjct: 316 GENIWNPLDLLKSFLDHSNH 335


>SPCC965.11c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 8   LDY*GKHMLNIGIWYIYWCFCQSYNLL 88
           L Y G H+ + G + I+W F   Y +L
Sbjct: 146 LQYWGPHVPSYGFFLIFWGFFTCYQML 172


>SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit
           Apc5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 737

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 694 YGKFCFHKNRMGSVRSSLFDTFSHIFVSLSNYFAGV 587
           Y  +     R+ S+ S  F+    IF+SL NY  GV
Sbjct: 86  YSVYSLLHERLWSLHS--FEDIHEIFISLGNYIEGV 119


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 647  RSNTTHSIFVETKFPVI 697
            R N TH + VETK P I
Sbjct: 1072 RDNPTHGLLVETKHPFI 1088


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +2

Query: 647  RSNTTHSIFVETKFPVI 697
            R N TH + VETK P I
Sbjct: 1072 RDNPTHGLLVETKHPFI 1088


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,711,896
Number of Sequences: 5004
Number of extensions: 51487
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)