Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0262
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016664-10|AAB66064.3|  330|Caenorhabditis elegans Serpentine r...    29   4.3  
AF016429-3|AAB65366.1|  383|Caenorhabditis elegans Hypothetical ...    28   5.7  

>AF016664-10|AAB66064.3|  330|Caenorhabditis elegans Serpentine
           receptor, class i protein37 protein.
          Length = 330

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 35  NIGIWYIYWCFCQSYNLLLCMLWFSYNRIDL 127
           +I IW +  C   ++  + C+L FSY  IDL
Sbjct: 185 DISIWILIVCAISAFGGVSCILLFSYITIDL 215


>AF016429-3|AAB65366.1|  383|Caenorhabditis elegans Hypothetical
           protein T21H3.5 protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 158 VQICTSLMIVLSQSCYTRTIAYIIADYNFDKNTNI 54
           + + TSL I ++   Y R + +II D+   KN N+
Sbjct: 291 ITLTTSLTIFVNFRAYRRQLGFIIIDFFRQKNVNL 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,454,424
Number of Sequences: 27780
Number of extensions: 275952
Number of successful extensions: 575
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 575
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)