Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0262
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g46200.1 68418.m05684 expressed protein contains similarity t...    28   5.3  

>At5g46200.1 68418.m05684 expressed protein contains similarity to
           carboxyl-terminal proteinase contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function;
           expression supported by MPSS
          Length = 408

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -3

Query: 128 LSQSCYTRTIAYIIADYN-FDKNTNIYTKYL 39
           LS+SC+ + + Y+++DY+  D N N   +Y+
Sbjct: 347 LSRSCFMKQLKYVLSDYSVVDINANEVEQYV 377


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,101,897
Number of Sequences: 28952
Number of extensions: 234504
Number of successful extensions: 389
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)