Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0259
         (438 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0224 - 1905978-1907084,1907489-1908070,1908653-1908667           28   2.9  
11_04_0009 - 12132781-12133272                                         27   5.0  
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057...    27   5.0  
01_06_0376 - 28863574-28863594,28863758-28864357,28865303-28865812     27   5.0  
03_06_0498 - 34341441-34341575,34341808-34341945,34342019-343421...    27   6.6  

>01_01_0224 - 1905978-1907084,1907489-1908070,1908653-1908667
          Length = 567

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 314 ILKLTSRLNNTSIYGVRFKDHFPIALAEPRTSIAGPA 204
           +LKL  R   T+I  V+ ++ FPI     +T+I  PA
Sbjct: 206 VLKLGRRTGGTAIRVVQVENSFPIGACINKTAIQNPA 242


>11_04_0009 - 12132781-12133272
          Length = 163

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 154 RSSTWVREQRWSCSKPAPERRRRIGSLR 71
           R   W RE+R S  +  P +RRR+G  R
Sbjct: 108 RGEAWRRERRDSKIESRPSQRRRVGGRR 135


>04_04_0198 +
           23502657-23502900,23505228-23505298,23505690-23505727,
           23505905-23507693
          Length = 713

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = -3

Query: 193 HHGCSCPFFQFS 158
           HHGC CP FQ++
Sbjct: 75  HHGCRCPGFQYA 86


>01_06_0376 - 28863574-28863594,28863758-28864357,28865303-28865812
          Length = 376

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -2

Query: 314 ILKLTSRLNNTSIYGVRFKDHFPIALAEPRTSIAGPALTMPSRMFLPIFSIFLKIF 147
           +L L  +L   S++ VR   H P  LA      A   +   SR  +P F    +IF
Sbjct: 100 LLILMLQLLRASVFIVRAARHLPAVLASVTAGSAAALVYAESRRGVPAFRSLARIF 155


>03_06_0498 -
           34341441-34341575,34341808-34341945,34342019-34342117,
           34342320-34342400,34342548-34342610,34342717-34342764,
           34343033-34343410,34345413-34345537,34345635-34345701,
           34345797-34345856,34346495-34346621,34346670-34346986
          Length = 545

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +1

Query: 97  ALVLALSMTSAAPEPRWKIFKKIEKMGRNIRDGIVKAGPAIEVL 228
           A+++A+ M +  P PRW + + ++    ++ D   KA  A+  L
Sbjct: 259 AVIMAIGMWNLPPSPRWLLLRAVQGKA-SVEDNKKKAIQALRSL 301


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,116,637
Number of Sequences: 37544
Number of extensions: 182094
Number of successful extensions: 376
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)