Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0259
         (438 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containi...    29   1.8  
At2g39960.1 68415.m04910 microsomal signal peptidase 25 kDa subu...    28   3.2  
At1g59520.3 68414.m06686 expressed protein (CW7)                       27   4.2  
At1g59520.1 68414.m06685 expressed protein (CW7)                       27   4.2  

>At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587, post-transcriptional control of
           chloroplast gene expression CRP1 [Zea mays] GI:3289002;
           contains Pfam profile PF01535: PPR repeat
          Length = 991

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -3

Query: 118 CSKPAP-ERRRRIGSLRNSL*VYVNSNADVKTQAALYC 8
           CSKP P  R+R+ G +  S+   ++S+ D++T  A  C
Sbjct: 70  CSKPNPSSRKRKYGGVIPSILRSLDSSTDIETTLASLC 107


>At2g39960.1 68415.m04910 microsomal signal peptidase 25 kDa
           subunit, putative (SPC25) identical to Probable
           microsomal signal peptidase 25 kDa subunit (EC 3.4.-.-)
           (SPase 25 kDa subunit) (SPC25) (Swiss-Prot:P58684)
           [Arabidopsis thaliana]; contains non-consensus AT-AC
           splice sites; contains 1 transmembrane domain;
          Length = 192

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = -3

Query: 436 QFYNITFITKKTLADIXFKLYLKLNIIMEIQSYTSNSNLITY 311
           QFYN  F   +        LY+ LN ++++  YT   N I +
Sbjct: 66  QFYNKKFPENRDFLIGCIALYVVLNAVLQLILYTKEKNAILF 107


>At1g59520.3 68414.m06686 expressed protein (CW7)
          Length = 388

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 218 IAGPALTMPSRMFLPIFSIFLKIFHLGSGAALVMLKASTRAKTKDRIF 75
           + GP   M S+  + + SIF K   + S AA   + A+T +  +D +F
Sbjct: 310 VLGPVSPMSSKKSIDLGSIFRKAASVASVAAKHAIAAATASYDEDEMF 357


>At1g59520.1 68414.m06685 expressed protein (CW7)
          Length = 388

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 218 IAGPALTMPSRMFLPIFSIFLKIFHLGSGAALVMLKASTRAKTKDRIF 75
           + GP   M S+  + + SIF K   + S AA   + A+T +  +D +F
Sbjct: 310 VLGPVSPMSSKKSIDLGSIFRKAASVASVAAKHAIAAATASYDEDEMF 357


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,214,322
Number of Sequences: 28952
Number of extensions: 146027
Number of successful extensions: 291
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 692941200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)