Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0256
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    26   2.3  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   3.1  
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz...    25   4.1  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    25   5.4  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   5.4  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    24   7.1  
SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|ch...    24   9.4  

>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 18  VDPPGCRTNSAATHSC 65
           +DPPGC+    A H+C
Sbjct: 507 IDPPGCQDIDDALHAC 522


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 339  KFAKAFTQLTLRYFSKRTKCHLLFYHRRLTNVLK 238
            K  K   +  L+YFS +TK  LL     L ++LK
Sbjct: 1536 KAYKLIDEKLLQYFSTKTKNSLLIIESSLPHILK 1569


>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 499

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 95  ESYLKFPAPITRS*S*FVDCRFIECRIKF 181
           ES L FP P+ R  + F D   + CRI +
Sbjct: 411 ESRLGFPPPVVRMSNEFKDIAELFCRIPY 439


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 93  ELRCTQQFCRSCVSRHYWSCSPGD 22
           E RC   FCR CV+ +  +   G+
Sbjct: 723 ESRCHHTFCRLCVTEYINAAGDGE 746


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -2

Query: 376 FYNFHTNAHFMNQICQS 326
           F+  H  +HF N  CQS
Sbjct: 7   FHEHHAKSHFHNNACQS 23


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 362 YKRTFHEPNLPKHSHS*LCDIFQSALNVIYYF 267
           YKR + +P L   SHS L   F +   ++  F
Sbjct: 450 YKRLWRQPQLCNSSHSPLLGFFTTLPGILRVF 481


>SPAC3H8.08c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 563

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = +2

Query: 293 FEKYRKVNCVNALANLVHEMCVCMKIIKV 379
           +  Y+    V +LANL+   C+  KI+ +
Sbjct: 120 YSSYKDNVVVESLANLLPPFCISQKIVNL 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,374,503
Number of Sequences: 5004
Number of extensions: 21081
Number of successful extensions: 56
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)