Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0256
         (383 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985     27   5.1  
08_02_1316 - 26088302-26088405,26089203-26089317                       27   6.7  
03_02_0275 + 7042433-7042732,7042864-7043140,7043751-7044231,704...    27   6.7  

>04_04_1029 + 30243218-30244163,30246090-30246254,30246775-30247985
          Length = 773

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 24  PPGCRTNSAATHSCGRTAACSVVRN 98
           P  C  NSA+ + CG  + C+ V N
Sbjct: 268 PGNCEQNSASQYPCGSMSTCNDVYN 292


>08_02_1316 - 26088302-26088405,26089203-26089317
          Length = 72

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +3

Query: 24  PPGCRTNSAATHSCGRTAACSVVRNHILSFQR 119
           P  CRT+ AA+  C  +AAC+  R   ++ QR
Sbjct: 8   PASCRTSPAASPCCEYSAACA-FRATAMNMQR 38


>03_02_0275 +
           7042433-7042732,7042864-7043140,7043751-7044231,
           7044943-7045491,7045556-7045680,7045824-7045966
          Length = 624

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 114 GNLRYDSELRCTQQFCRSCVSRHYWSCS 31
           G++  + E  C +QFC +C S  +  CS
Sbjct: 273 GDIHCEVECTCGRQFCFNCSSEAHSPCS 300


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,831,112
Number of Sequences: 37544
Number of extensions: 136831
Number of successful extensions: 296
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)