Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0256
(383 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39375| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.18
SB_10608| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.43
SB_6593| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.98
SB_22214| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_49519| Best HMM Match : DUF1378 (HMM E-Value=8.8) 29 1.7
SB_57745| Best HMM Match : Extensin_2 (HMM E-Value=0.69) 28 2.3
SB_55896| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.3
SB_2747| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.0
SB_55776| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_29285| Best HMM Match : DUF1201 (HMM E-Value=2.4) 27 4.0
SB_18780| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_15081| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.0
SB_56142| Best HMM Match : zf-B_box (HMM E-Value=2.9e-10) 27 5.2
SB_22621| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_4994| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.2
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33) 27 5.2
SB_56066| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_29872| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_21569| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_7552| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_47151| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_26132| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_15537| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_39040| Best HMM Match : ChaB (HMM E-Value=4.2) 26 9.2
SB_35514| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4) 26 9.2
SB_9512| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_8846| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_55065| Best HMM Match : ChaB (HMM E-Value=4.2) 26 9.2
SB_48897| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_36256| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_23020| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_14727| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.2
>SB_39375| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 151
Score = 31.9 bits (69), Expect = 0.18
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = -3
Query: 108 LRYDSELRCTQQFCRSCVSRHYWSCSPGDPLV 13
L Y++ L C + R+C S + SCSPGDPLV
Sbjct: 10 LAYNAFL-CNEDLARTCFSSN--SCSPGDPLV 38
>SB_10608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 30.7 bits (66), Expect = 0.43
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = -3
Query: 69 CRSCVSRHYWSCSPGDPLV 13
C SCV + SCSPGDPLV
Sbjct: 64 CVSCVVQKSNSCSPGDPLV 82
>SB_6593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 0.98
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 21 DPPGCRTNSAATHSCGRTAACSVVRNHIL 107
DP N SCGR+ AC+VVR++ L
Sbjct: 478 DPAASAWNFVLPMSCGRSGACAVVRDNKL 506
>SB_22214| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 150
Score = 29.1 bits (62), Expect = 1.3
Identities = 15/26 (57%), Positives = 17/26 (65%)
Frame = -3
Query: 90 LRCTQQFCRSCVSRHYWSCSPGDPLV 13
LR ++ C C SR SCSPGDPLV
Sbjct: 14 LRAVRRDC--CRSRGSNSCSPGDPLV 37
>SB_49519| Best HMM Match : DUF1378 (HMM E-Value=8.8)
Length = 213
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -3
Query: 87 RCTQQFCRSCVSR-HYWSCSPGDPLV 13
RC R+ VS+ SCSPGDPLV
Sbjct: 103 RCVSDVTRALVSKAESNSCSPGDPLV 128
>SB_57745| Best HMM Match : Extensin_2 (HMM E-Value=0.69)
Length = 472
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -3
Query: 84 CTQ--QFCRSCVSRHYWSCSPGDPLV 13
CTQ Q+ S VS SCSPGDPLV
Sbjct: 337 CTQYPQYLHSIVSN---SCSPGDPLV 359
>SB_55896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +3
Query: 6 ASRLVDPPGCRTNSAATHSCG 68
A LVDPPGCR NS + CG
Sbjct: 12 ALELVDPPGCR-NSISLVQCG 31
>SB_2747| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 162
Score = 27.9 bits (59), Expect = 3.0
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -3
Query: 132 LLVMGAGNLRYDSELRCTQQFCRSCVSRHYWSCSPGDPLV 13
LLV+ + Y S+ + ++F + C S SCSPGDPLV
Sbjct: 15 LLVLKSPTASY-SKTQAVEKF-KKCTSN---SCSPGDPLV 49
>SB_55776| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 27.5 bits (58), Expect = 4.0
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -3
Query: 108 LRYDSELRCTQQFCRSCVSRHYW-SCSPGDPLV 13
L Y +Q F +S +SR SCSPGDPLV
Sbjct: 60 LLYSGNPPSSQVFSQSPLSRFTSNSCSPGDPLV 92
>SB_29285| Best HMM Match : DUF1201 (HMM E-Value=2.4)
Length = 332
Score = 27.5 bits (58), Expect = 4.0
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 96 SELRCTQQFCRSCVSRHYWSCSPGDPLV 13
+ ++ T F R+ + SCSPGDPLV
Sbjct: 6 ANIQATSYFLRNSSNISSNSCSPGDPLV 33
>SB_18780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 6 ASRLVDPPGCRTNSAATHSCGRTAACSVVRNHILSF 113
A LVDPPGCR NS ++ G T ++ ++++ F
Sbjct: 12 ALELVDPPGCR-NSMEMYTFG-TQYWMIISSYVILF 45
>SB_15081| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 139
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/22 (63%), Positives = 14/22 (63%)
Frame = -3
Query: 78 QQFCRSCVSRHYWSCSPGDPLV 13
QQF R S SCSPGDPLV
Sbjct: 5 QQFIRYPRSTASNSCSPGDPLV 26
>SB_56142| Best HMM Match : zf-B_box (HMM E-Value=2.9e-10)
Length = 691
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 24 PPGCRTNSAATHSCGRTAAC 83
PPGC T A H+ GR C
Sbjct: 96 PPGCETCDANAHAWGRCEEC 115
>SB_22621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 27.1 bits (57), Expect = 5.2
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 78 QQFCRSCVSRHYWSCSPGDPLV 13
Q + R V R SCSPGDPLV
Sbjct: 30 QGYIREFVLRVSNSCSPGDPLV 51
>SB_4994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 113
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +3
Query: 6 ASRLVDPPGCRTNSAA 53
A LVDPPGCR + AA
Sbjct: 12 ALELVDPPGCRNSIAA 27
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 102 YDSELRCTQQFCRSCVSR-HYWSCSPGDPL 16
++++LR Q C+S H+W PGDPL
Sbjct: 751 FETDLRTHTQGQAFCLSVFHHWQIVPGDPL 780
>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
Length = 119
Score = 27.1 bits (57), Expect = 5.2
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -3
Query: 102 YDSELRCTQQFCRSCVSR-HYWSCSPGDPL 16
++++LR Q C+S H+W PGDPL
Sbjct: 61 FETDLRTHTQGQAFCLSVFHHWQIVPGDPL 90
>SB_56066| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 654
Score = 26.6 bits (56), Expect = 6.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 301 ISQSQLCECFGKFGS*NVRLYEN 369
++ S +C CFG FG RL +N
Sbjct: 1 MATSHICSCFGNFGPRYKRLVDN 23
>SB_29872| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 6 ASRLVDPPGCRTNSAATHSCGR 71
A LVDPPGCR + + GR
Sbjct: 12 ALELVDPPGCRNSMHIGQASGR 33
>SB_21569| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 5/29 (17%)
Frame = -3
Query: 84 CTQQFCRSCVSR-----HYWSCSPGDPLV 13
C+++FC S +SR SCSPGDPLV
Sbjct: 50 CSREFCAS-LSRLQRQGRSNSCSPGDPLV 77
>SB_7552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3
Query: 96 SELRCTQQFCRSCVSRHYWSCSPGDPLV 13
+++ C +Q R + + SCSPGDPLV
Sbjct: 66 AKVHCRKQRSREVATSN--SCSPGDPLV 91
>SB_47151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 26.6 bits (56), Expect = 6.9
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 78 QQFCRSCVSRHYWSCSPGDPLV 13
QQ R + R SCSPGDPLV
Sbjct: 4 QQSDRPHIHRASNSCSPGDPLV 25
>SB_26132| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 191
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 72 FCRSCVSRHYWSCSPGDPLV 13
FC S + + SCSPGDPLV
Sbjct: 61 FCYSFIGSN--SCSPGDPLV 78
>SB_15537| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 26.6 bits (56), Expect = 6.9
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -3
Query: 72 FCRSCVSRHYWSCSPGDPLV 13
FC + +S SCSPGDPLV
Sbjct: 17 FCVNGLSPGSNSCSPGDPLV 36
>SB_39040| Best HMM Match : ChaB (HMM E-Value=4.2)
Length = 401
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = +1
Query: 1 GGRLD*WIPRAAGPIV--PRHTAA 66
GGR+ W+PR G V PRH+ A
Sbjct: 63 GGRVPPWVPRERGDPVRPPRHSGA 86
>SB_35514| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 26.2 bits (55), Expect = 9.2
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +3
Query: 6 ASRLVDPPGCRTN--SAATHSCGRTAACS 86
A LVDPPGCR + +A T S G A S
Sbjct: 12 ALELVDPPGCRNSMENARTSSPGFQGAYS 40
>SB_11176| Best HMM Match : PTS_EIIB (HMM E-Value=4.4)
Length = 117
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 6 ASRLVDPPGCRTNSAATH 59
A LVDPPGCR + H
Sbjct: 69 ALELVDPPGCRNSITVFH 86
>SB_9512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 147
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 6 ASRLVDPPGCRTNSAATH 59
A LVDPPGCR NS H
Sbjct: 12 ALELVDPPGCR-NSIKVH 28
>SB_8846| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 26.2 bits (55), Expect = 9.2
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = -3
Query: 69 CRSCVSRHYWSCSPGDPLV 13
C +S SCSPGDPLV
Sbjct: 4 CPDVISELSNSCSPGDPLV 22
>SB_55065| Best HMM Match : ChaB (HMM E-Value=4.2)
Length = 221
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = +1
Query: 1 GGRLD*WIPRAAGPIV--PRHTAA 66
GGR+ W+PR G V PRH+ A
Sbjct: 63 GGRVPPWVPRERGDPVRPPRHSGA 86
>SB_48897| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/27 (48%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Frame = -3
Query: 84 CTQQFCRSCVSRHYW---SCSPGDPLV 13
CT C H SCSPGDPLV
Sbjct: 40 CTPPLLSPCTPPHLSPSNSCSPGDPLV 66
>SB_36256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 122
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 6 ASRLVDPPGCRTNSAAT 56
A LVDPPGCR + A+
Sbjct: 12 ALELVDPPGCRNSMVAS 28
>SB_23020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = -3
Query: 48 HYWSCSPGDPLV 13
H SCSPGDPLV
Sbjct: 5 HAHSCSPGDPLV 16
>SB_14727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 26.2 bits (55), Expect = 9.2
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = -3
Query: 78 QQFCRSCVSRHYWS--CSPGDPLV 13
Q R+C + + S CSPGDPLV
Sbjct: 42 QNAIRACTDKPFRSNSCSPGDPLV 65
>SB_5500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 26.2 bits (55), Expect = 9.2
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 6 ASRLVDPPGCRTNSAATHSCGRTAACSVVRN 98
A LVDPPGCR NS + G+ + + N
Sbjct: 75 ALELVDPPGCR-NSMDSRVVGKPVVPAALMN 104
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,317,648
Number of Sequences: 59808
Number of extensions: 162684
Number of successful extensions: 1931
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1931
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 656970245
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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