Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0256
         (383 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...    28   2.6  
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.        28   2.6  
AF273832-1|AAG15180.1|  408|Caenorhabditis elegans nuclear recep...    27   6.0  
AF022984-9|AAB69950.2|  393|Caenorhabditis elegans Nuclear hormo...    27   6.0  

>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
           protein 1 protein.
          Length = 974

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 102 YDSELRCTQQFCRSCVSR-HYWSCSPGDPL 16
           ++++LR   Q    C+S  H+W   PGDPL
Sbjct: 887 FETDLRIHTQGQAFCMSAFHHWQLVPGDPL 916


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 102 YDSELRCTQQFCRSCVSR-HYWSCSPGDPL 16
           ++++LR   Q    C+S  H+W   PGDPL
Sbjct: 762 FETDLRIHTQGQAFCMSAFHHWQLVPGDPL 791


>AF273832-1|AAG15180.1|  408|Caenorhabditis elegans nuclear receptor
           NHR-90 protein.
          Length = 408

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 363 IQTHIS*TKFAKAFTQLTLRYFSKRTKCHLLFYHRRLTNVLKNYLHKF 220
           ++  +S  +F     QLT  Y  KR +  +L    R   VL N LH++
Sbjct: 299 MELEVSDMEFNFMLAQLTFSYAGKRFQGDILKICDRFQEVLSNDLHEY 346


>AF022984-9|AAB69950.2|  393|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 90 protein.
          Length = 393

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = -3

Query: 363 IQTHIS*TKFAKAFTQLTLRYFSKRTKCHLLFYHRRLTNVLKNYLHKF 220
           ++  +S  +F     QLT  Y  KR +  +L    R   VL N LH++
Sbjct: 284 MELEVSDMEFNFMLAQLTFSYAGKRFQGDILKICDRFQEVLSNDLHEY 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,807,238
Number of Sequences: 27780
Number of extensions: 123592
Number of successful extensions: 319
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)