Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0256
         (383 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   2.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   2.8  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   3.7  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   4.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = +2

Query: 341 VHEMCVCMKIIKVH 382
           +H+ C+C++ I  H
Sbjct: 484 IHKSCICVRFIAEH 497


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.8 bits (44), Expect = 2.8
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = +2

Query: 341 VHEMCVCMKIIKVH 382
           +H+ C+C++ I  H
Sbjct: 484 IHKSCICVRFIAEH 497


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 77  CVQRSSESYLKFPAPIT 127
           CV  + ESY KF   +T
Sbjct: 171 CVSDNGESYAKFTISVT 187


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 359 KRTFHEPNLPKH 324
           K TFHE ++P H
Sbjct: 99  KVTFHEMSIPNH 110


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,340
Number of Sequences: 438
Number of extensions: 1670
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)