Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0256
         (383 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25560.1 68417.m03684 myb family transcription factor (MYB18)...    28   1.9  
At1g65430.1 68414.m07423 zinc finger protein-related contains we...    26   7.5  
At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter...    26   9.9  
At1g30400.1 68414.m03716 glutathione S-conjugate ABC transporter...    26   9.9  

>At4g25560.1 68417.m03684 myb family transcription factor (MYB18)
           contains PFAM profile: Myb DNA binding domain PF00249
          Length = 283

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 11/37 (29%), Positives = 24/37 (64%)
 Frame = +3

Query: 9   SRLVDPPGCRTNSAATHSCGRTAACSVVRNHILSFQR 119
           ++ + PP   ++S++  +CG+    +++ NH+ SFQR
Sbjct: 123 AKSISPPS--SSSSSLVACGKRNPETLISNHVFSFQR 157


>At1g65430.1 68414.m07423 zinc finger protein-related contains weak
           similarity to zinc finger proteins and a Pfam:PF01485
           IBR domain
          Length = 567

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 126 VMGAGNLRYDSELRCTQQFCRSC 58
           V+G+GN  YD   RC   FC +C
Sbjct: 229 VVGSGN--YDVNCRCCYSFCWNC 249


>At2g34660.1 68415.m04258 glutathione S-conjugate ABC transporter
           (MRP2) almost identical to MgATP-energized glutathione
           S-conjugate pump GI:2909781 from [Arabidopsis thaliana]
          Length = 1623

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 361 TNAHFMNQICQSIHTVDFAIF 299
           T+A  + QICQS+HT+  A F
Sbjct: 405 TDAESLQQICQSLHTMWSAPF 425


>At1g30400.1 68414.m03716 glutathione S-conjugate ABC transporter
           (MRP1) identical to glutathione S-conjugate transporting
           ATPase (AtMRP1) [Arabidopsis thaliana] GI:2340166
          Length = 1622

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 361 TNAHFMNQICQSIHTVDFAIF 299
           T+A  + QICQS+HT+  A F
Sbjct: 405 TDAESLQQICQSLHTMWSAPF 425


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,072,243
Number of Sequences: 28952
Number of extensions: 105524
Number of successful extensions: 231
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)