Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0255
         (569 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0001597C7B Cluster: hypothetical protein RBAM_037100...    35   1.5  
UniRef50_Q23JE5 Cluster: Hypothetical repeat containing protein;...    32   8.2  

>UniRef50_UPI0001597C7B Cluster: hypothetical protein RBAM_037100;
           n=1; Bacillus amyloliquefaciens FZB42|Rep: hypothetical
           protein RBAM_037100 - Bacillus amyloliquefaciens FZB42
          Length = 79

 Score = 34.7 bits (76), Expect = 1.5
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 210 HYSNE*YLTMILH*YQSNTIKSAEAGFLTLGSHCVYGYPLWLSSCHE 350
           H++   Y  + +  Y+SN  + +   F+ LG  CVYG   WL SC +
Sbjct: 35  HFTQVFYKKLYIRVYKSN--ERSYPHFMNLGRWCVYGKSFWLCSCFD 79


>UniRef50_Q23JE5 Cluster: Hypothetical repeat containing protein; n=1;
            Tetrahymena thermophila SB210|Rep: Hypothetical repeat
            containing protein - Tetrahymena thermophila SB210
          Length = 3955

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 264  CYFDTNAISWLNIIHCCSVQVSLALPLNFVFENE 163
            C+ DTN+I +  I HCC    + A  L ++ EN+
Sbjct: 1447 CFNDTNSICFDQINHCCVNYTNSAFYLGYIIENK 1480


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 430,403,316
Number of Sequences: 1657284
Number of extensions: 6838363
Number of successful extensions: 9463
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9462
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)