Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0254
         (408 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    23   0.87 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   1.5  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    21   4.6  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    21   4.6  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    21   4.6  
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    21   6.1  
X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.          20   8.1  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           20   8.1  

>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 23.4 bits (48), Expect = 0.87
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 244 DVDIRKDLYANTVLSGGTTMYPGI 315
           D D+ KD     VL GG+T  P I
Sbjct: 150 DADMTKDQIDEIVLVGGSTRIPKI 173


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 53  DFEQEMAPLHPAAPSRSLTNFPTVRSSPSE 142
           DFE  +  ++   P+++ TN PT R    E
Sbjct: 357 DFELLIKGVYQVNPTKTRTNLPTHRHPQDE 386


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 179 PRSWVWKLAASTRPHITSS*SATWTS 256
           PRS++  L+ S R H+ +  SA  T+
Sbjct: 196 PRSYIPPLSTSMRSHLCNWGSANSTN 221


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 179 PRSWVWKLAASTRPHITSS*SATWTS 256
           PRS++  L+ S R H+ +  SA  T+
Sbjct: 356 PRSYIPPLSTSMRSHLCNWGSANSTN 381


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 179 PRSWVWKLAASTRPHITSS*SATWTS 256
           PRS++  L+ S R H+ +  SA  T+
Sbjct: 356 PRSYIPPLSTSMRSHLCNWGSANSTN 381


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = +2

Query: 44  VALDFEQEMAP--LHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWV 193
           V  D E+ + P   H  +P R    FPT  S P+   D ++  ++    SW+
Sbjct: 56  VMADIERVIMPGVTHWHSP-RFHAYFPTANSYPAIVADILSGAIACIGFSWI 106


>X97819-1|CAA66399.1|  251|Tribolium castaneum ZEN Tc protein.
          Length = 251

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 119 TVRSSPSETKDSVA-QRLSSNPRS 187
           T RSSP+ET  S++ Q ++S   S
Sbjct: 153 TPRSSPAETASSLSPQSVASTASS 176


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 20.2 bits (40), Expect = 8.1
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +2

Query: 119 TVRSSPSETKDSVA-QRLSSNPRS 187
           T RSSP+ET  S++ Q ++S   S
Sbjct: 144 TPRSSPAETASSLSPQSVASTASS 167


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 102,362
Number of Sequences: 336
Number of extensions: 2333
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)