Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0254
(408 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 227 4e-60
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 225 8e-60
SB_56| Best HMM Match : Actin (HMM E-Value=0) 225 8e-60
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 225 1e-59
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 224 2e-59
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 222 8e-59
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 194 2e-50
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 96 9e-21
SB_54| Best HMM Match : Actin (HMM E-Value=0) 86 9e-18
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 60 9e-10
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 50 6e-07
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 6e-04
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 38 0.003
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 36 0.010
SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.21
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 30 0.63
SB_3271| Best HMM Match : PTPS (HMM E-Value=6.6) 29 1.1
SB_22949| Best HMM Match : rve (HMM E-Value=1.2e-19) 29 1.5
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_27561| Best HMM Match : DUF720 (HMM E-Value=0.47) 28 2.6
SB_34205| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25) 28 3.4
SB_58386| Best HMM Match : rve (HMM E-Value=8.6e-26) 28 3.4
SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_53874| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24) 27 4.5
SB_38098| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.5
SB_26480| Best HMM Match : EGF (HMM E-Value=0) 27 5.9
SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10) 27 7.8
SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10) 27 7.8
SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15) 27 7.8
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 227 bits (554), Expect = 4e-60
Identities = 106/112 (94%), Positives = 109/112 (97%)
Frame = +1
Query: 73 TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNFIMKCDVD 252
TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTYN IMKCDVD
Sbjct: 192 TAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVD 251
Query: 253 IRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVW 408
IRKDLYANTVLSGGTTMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVW
Sbjct: 252 IRKDLYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVW 303
Score = 35.5 bits (78), Expect = 0.017
Identities = 19/27 (70%), Positives = 20/27 (74%)
Frame = +2
Query: 26 REKLCYVALDFEQEMAPLHPAAPSRSL 106
+EKLCYVALDFEQEM AA S SL
Sbjct: 176 KEKLCYVALDFEQEM---QTAASSSSL 199
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 225 bits (551), Expect = 8e-60
Identities = 105/112 (93%), Positives = 109/112 (97%)
Frame = +1
Query: 73 TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNFIMKCDVD 252
TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTYN IMKCDVD
Sbjct: 230 TAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVD 289
Query: 253 IRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVW 408
IRKDLYANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVW
Sbjct: 290 IRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVW 341
Score = 35.5 bits (78), Expect = 0.017
Identities = 19/27 (70%), Positives = 20/27 (74%)
Frame = +2
Query: 26 REKLCYVALDFEQEMAPLHPAAPSRSL 106
+EKLCYVALDFEQEM AA S SL
Sbjct: 214 KEKLCYVALDFEQEM---ETAASSSSL 237
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 225 bits (551), Expect = 8e-60
Identities = 105/112 (93%), Positives = 109/112 (97%)
Frame = +1
Query: 73 TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNFIMKCDVD 252
TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTYN IMKCDVD
Sbjct: 229 TAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVD 288
Query: 253 IRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVW 408
IRKDLYANTVLSGG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPERKYSVW
Sbjct: 289 IRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPERKYSVW 340
Score = 35.5 bits (78), Expect = 0.017
Identities = 19/27 (70%), Positives = 20/27 (74%)
Frame = +2
Query: 26 REKLCYVALDFEQEMAPLHPAAPSRSL 106
+EKLCYVALDFEQEM AA S SL
Sbjct: 213 KEKLCYVALDFEQEM---QTAASSSSL 236
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 225 bits (550), Expect = 1e-59
Identities = 105/112 (93%), Positives = 109/112 (97%)
Frame = +1
Query: 73 TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNFIMKCDVD 252
TAASSSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTYN IMKCDVD
Sbjct: 230 TAASSSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVD 289
Query: 253 IRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVW 408
IRKDLYANTVLSGG+TMYPGIADRMQKEI+ALAP TMKIKIIAPPERKYSVW
Sbjct: 290 IRKDLYANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVW 341
Score = 35.5 bits (78), Expect = 0.017
Identities = 19/27 (70%), Positives = 20/27 (74%)
Frame = +2
Query: 26 REKLCYVALDFEQEMAPLHPAAPSRSL 106
+EKLCYVALDFEQEM AA S SL
Sbjct: 214 KEKLCYVALDFEQEMT---TAASSSSL 237
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 224 bits (548), Expect = 2e-59
Identities = 104/112 (92%), Positives = 109/112 (97%)
Frame = +1
Query: 73 TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNFIMKCDVD 252
TAASSSS+EKSYELPDGQVITIGNERFRCPEAL QPSFLGME+ GIHETTYN IMKCDVD
Sbjct: 203 TAASSSSIEKSYELPDGQVITIGNERFRCPEALLQPSFLGMESSGIHETTYNSIMKCDVD 262
Query: 253 IRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVW 408
IRKDLYANTV+SGGTTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPERKYSVW
Sbjct: 263 IRKDLYANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPERKYSVW 314
Score = 34.7 bits (76), Expect = 0.029
Identities = 14/15 (93%), Positives = 15/15 (100%)
Frame = +2
Query: 26 REKLCYVALDFEQEM 70
+EKLCYVALDFEQEM
Sbjct: 187 KEKLCYVALDFEQEM 201
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 222 bits (543), Expect = 8e-59
Identities = 103/112 (91%), Positives = 109/112 (97%)
Frame = +1
Query: 73 TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNFIMKCDVD 252
TAA+SSSLEKSYELPDGQVITIGNERFRCPEA+FQPSFLGME+ GIHETTYN IMKCDVD
Sbjct: 229 TAAASSSLEKSYELPDGQVITIGNERFRCPEAMFQPSFLGMESAGIHETTYNSIMKCDVD 288
Query: 253 IRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVW 408
IRKDLYANTVLSGG+TM+PGIADRMQKEI+ALAP TMKIKIIAPPERKYSVW
Sbjct: 289 IRKDLYANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVW 340
Score = 33.5 bits (73), Expect = 0.068
Identities = 19/27 (70%), Positives = 20/27 (74%)
Frame = +2
Query: 26 REKLCYVALDFEQEMAPLHPAAPSRSL 106
+EKL YVALDFEQEMA AA S SL
Sbjct: 213 KEKLAYVALDFEQEMA---TAAASSSL 236
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 194 bits (474), Expect = 2e-50
Identities = 88/110 (80%), Positives = 100/110 (90%)
Frame = +1
Query: 79 ASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNFIMKCDVDIR 258
A+S LEK+YELPDGQVI+IGNERFRCPEA+FQP+FLGMEA GIHE YN IMKCDVDIR
Sbjct: 5 ANSPILEKTYELPDGQVISIGNERFRCPEAMFQPAFLGMEAPGIHEAIYNCIMKCDVDIR 64
Query: 259 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVW 408
KDLY+N VLSGG+TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVW
Sbjct: 65 KDLYSNCVLSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVW 114
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 96.3 bits (229), Expect = 9e-21
Identities = 41/91 (45%), Positives = 59/91 (64%)
Frame = +1
Query: 76 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNFIMKCDVDI 255
A ++ L + Y LPDG+V+ + ERF PEALFQP + +E G+ E +N I D+D
Sbjct: 234 ALETTVLVEQYTLPDGRVVKLSGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDT 293
Query: 256 RKDLYANTVLSGGTTMYPGIADRMQKEITAL 348
R + Y + VLSGG+TMYPG+ R+++EI L
Sbjct: 294 RSEFYKHIVLSGGSTMYPGLPSRLEREIKQL 324
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 86.2 bits (204), Expect = 9e-18
Identities = 40/72 (55%), Positives = 49/72 (68%)
Frame = +1
Query: 76 AASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNFIMKCDVDI 255
A +S E Y LPDGQ I IG+ERFR E LFQPS LG + GIHE+ + I KCD+D+
Sbjct: 2275 AETSDDCEAPYMLPDGQSIRIGSERFRAAEPLFQPSLLGRDIDGIHESIFKSIKKCDIDL 2334
Query: 256 RKDLYANTVLSG 291
R +L+ N VLSG
Sbjct: 2335 RAELFHNIVLSG 2346
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 59.7 bits (138), Expect = 9e-10
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Frame = +1
Query: 130 ITIGNERFRCPEALFQPSFLGME-ACGIHETTYNFIMKCDVDIRKDLYANTVLSGGTTMY 306
+ + ERF PE F P F + + E N I C +D+R+ LY N VLSGG+TM+
Sbjct: 196 VDVAYERFLGPEIFFHPEFSNPDFTTPLSEVVDNVIQNCPIDVRRPLYKNIVLSGGSTMF 255
Query: 307 PGIADRMQKEITALAPSTMKI 369
R+Q++I + +K+
Sbjct: 256 RDFGRRLQRDIKRTVDARLKM 276
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 50.4 bits (115), Expect = 6e-07
Identities = 20/76 (26%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Frame = +1
Query: 190 GMEACGIHETTYNFIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKI 369
G A G+ + + D+DIR L+ + +++GG T+ G +R+ +E+ + P +M++
Sbjct: 146 GSTAMGVTQVVTTSVGMTDIDIRAGLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRL 205
Query: 370 KII---APPERKYSVW 408
K+I + E++++ W
Sbjct: 206 KLISNNSSVEKRFNPW 221
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 40.3 bits (90), Expect = 6e-04
Identities = 19/42 (45%), Positives = 24/42 (57%)
Frame = +1
Query: 232 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPS 357
++ C +D RK L N VL GGT M PG R+ +EI L S
Sbjct: 66 LLLCPIDTRKTLAENIVLIGGTAMTPGFKHRLMQEIYLLLQS 107
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 37.9 bits (84), Expect = 0.003
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +1
Query: 232 IMKCDVDIRKDLYANTVLSGGTTMYPG 312
I K D+D+R+ LY+N VLSGG+T++ G
Sbjct: 265 IQKSDLDLRRVLYSNIVLSGGSTLFKG 291
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 36.3 bits (80), Expect = 0.010
Identities = 17/36 (47%), Positives = 22/36 (61%)
Frame = +1
Query: 82 SSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFL 189
++ L K Y LPDGQ+I+IG E E LF+P L
Sbjct: 863 TNEGLTKFYTLPDGQMISIGYECISSMEPLFRPDLL 898
>SB_30721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 40
Score = 31.9 bits (69), Expect = 0.21
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 160 PEALFQPSFLGMEACGIHET 219
PE +FQPS LG+E GI ET
Sbjct: 3 PEIIFQPSMLGLEQAGITET 22
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 30.3 bits (65), Expect = 0.63
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +2
Query: 26 REKLCYVALDFEQEM 70
+EKLCYVALDF QE+
Sbjct: 92 KEKLCYVALDFYQEI 106
>SB_3271| Best HMM Match : PTPS (HMM E-Value=6.6)
Length = 191
Score = 29.5 bits (63), Expect = 1.1
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -1
Query: 162 WATESFVSDGDDLTVGKFVRLLEGAAGCSGAISCS 58
W + SDG D V + + + + C G I+C+
Sbjct: 17 WMANGYQSDGGDTEVNRTIDCIAARSACEGDINCA 51
>SB_22949| Best HMM Match : rve (HMM E-Value=1.2e-19)
Length = 158
Score = 29.1 bits (62), Expect = 1.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 128 SSPSETKDSVAQRLSSNPRSWVWK 199
S+ SETK SV +R + + W+W+
Sbjct: 96 STKSETKASVVERFNRTSKEWMWR 119
>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 205
Score = 28.3 bits (60), Expect = 2.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 274 NTVLSGGTTMYPGIADRMQKEITALAP 354
N ++GG TMY R+++E+ A+ P
Sbjct: 132 NVFVTGGNTMYNNFMARLERELLAIRP 158
>SB_27561| Best HMM Match : DUF720 (HMM E-Value=0.47)
Length = 779
Score = 28.3 bits (60), Expect = 2.6
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 65 EMAPLHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRP 220
+ APL P +S+ FP + +E K ++ P+S VWK + RP
Sbjct: 159 QRAPLIPPLDRKSV--FPEKQDGENEIKTPEEEKKPKEPQSPVWKGTRTGRP 208
>SB_34205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 759
Score = 27.9 bits (59), Expect = 3.4
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = +1
Query: 199 ACGIHETTYNFIMKCDVDIRKDLYANTVLSGGTTMYPGIA 318
A H+ T + + + + +Y N ++ GT+ +PG++
Sbjct: 636 ALNFHDETGDILQSVTLKVGHVIYGNVLIPSGTSSFPGLS 675
>SB_20812| Best HMM Match : rve (HMM E-Value=1.2e-25)
Length = 1097
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 128 SSPSETKDSVAQRLSSNPRSWVWK 199
S+ SETK SV +R + + W+W+
Sbjct: 457 STKSETKASVVERFNRTFKGWMWR 480
>SB_58386| Best HMM Match : rve (HMM E-Value=8.6e-26)
Length = 212
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 128 SSPSETKDSVAQRLSSNPRSWVWK 199
S+ SETK SV +R + + W+W+
Sbjct: 93 STKSETKASVVERFNRTFKGWMWR 116
>SB_33253| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1383
Score = 27.9 bits (59), Expect = 3.4
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +2
Query: 128 SSPSETKDSVAQRLSSNPRSWVWK 199
S+ SETK SV +R + + W+W+
Sbjct: 439 STKSETKASVVERFNRTFKGWMWR 462
>SB_53874| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 174
Score = 27.5 bits (58), Expect = 4.5
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +2
Query: 80 HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRPHITS 232
HP SR +N P V S V R+ SN V+ S +PH+ S
Sbjct: 113 HPHVYSRVKSNHPHVYSRVKSNHPHVYSRVKSN-HPHVYSRVKSNQPHVYS 162
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2
Query: 80 HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRPHITS 232
HP SR +N P V S V R+ SN V+ S PH+ S
Sbjct: 3 HPHVYSRVRSNHPHVYSRVKSNHPHVYSRVKSN-HPHVYSRVKSNHPHVYS 52
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2
Query: 80 HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRPHITS 232
HP SR +N P V S V R+ SN V+ S PH+ S
Sbjct: 25 HPHVYSRVKSNHPHVYSRVKSNHPHVYSRVKSN-HPHVYSRVKSNHPHVYS 74
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2
Query: 80 HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRPHITS 232
HP SR +N P V S V R+ SN V+ S PH+ S
Sbjct: 47 HPHVYSRVKSNHPHVYSRVKSNHPHVYSRVKSN-HPHVYSRVKSNHPHVYS 96
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2
Query: 80 HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRPHITS 232
HP SR +N P V S V R+ SN V+ S PH+ S
Sbjct: 69 HPHVYSRVKSNHPHVYSRVKSNHPHVYSRVKSN-HPHVYSRVKSNHPHVYS 118
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2
Query: 80 HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRPHITS 232
HP SR +N P V S V R+ SN V+ S PH+ S
Sbjct: 91 HPHVYSRVKSNHPHVYSRVKSNHPHVYSRVKSN-HPHVYSRVKSNHPHVYS 140
>SB_18737| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 696
Score = 27.5 bits (58), Expect = 4.5
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = -2
Query: 296 VPPDNTVLAYKSLRMSTSHFMMKLYVVSWMPQASIPKNEGWKRASGQ 156
+PP N L++ R + ++ + + M +P+N GW+ +GQ
Sbjct: 560 LPPTNDSLSHHIKRANYQAYIWRSSTTA-MQNLPLPENNGWRNNAGQ 605
>SB_12796| Best HMM Match : Radical_SAM (HMM E-Value=8.9e-24)
Length = 676
Score = 27.5 bits (58), Expect = 4.5
Identities = 17/51 (33%), Positives = 22/51 (43%)
Frame = +2
Query: 80 HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRPHITS 232
HP SR +N P V S V R+ SN V+ S +PH+ S
Sbjct: 615 HPHVYSRVKSNHPHVYSRVKSNHPHVYSRVKSN-HPHVYSRVKSNQPHVYS 664
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2
Query: 80 HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRPHITS 232
HP SR +N P V S V R+ SN V+ S PH+ S
Sbjct: 351 HPHVYSRVKSNHPHVYSRVRRNHSHVYSRVKSN-HPHVYSRVKSNHPHVYS 400
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2
Query: 80 HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRPHITS 232
HP SR +N P V S V R+ SN V+ S PH+ S
Sbjct: 505 HPHVYSRVRSNHPHVYSRVKSNHPHVYSRVKSN-HPHVYSRVKSNHPHVYS 554
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2
Query: 80 HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRPHITS 232
HP SR +N P V S V R+ SN V+ S PH+ S
Sbjct: 527 HPHVYSRVKSNHPHVYSRVKSNHPHVYSRVKSN-HPHVYSRVKSNHPHVYS 576
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2
Query: 80 HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRPHITS 232
HP SR +N P V S V R+ SN V+ S PH+ S
Sbjct: 549 HPHVYSRVKSNHPHVYSRVKSNHPHVYSRVKSN-HPHVYSRVKSNHPHVYS 598
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2
Query: 80 HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRPHITS 232
HP SR +N P V S V R+ SN V+ S PH+ S
Sbjct: 571 HPHVYSRVKSNHPHVYSRVKSNHPHVYSRVKSN-HPHVYSRVKSNHPHVYS 620
Score = 27.1 bits (57), Expect = 5.9
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2
Query: 80 HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRPHITS 232
HP SR +N P V S V R+ SN V+ S PH+ S
Sbjct: 593 HPHVYSRVKSNHPHVYSRVKSNHPHVYSRVKSN-HPHVYSRVKSNHPHVYS 642
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/51 (33%), Positives = 21/51 (41%)
Frame = +2
Query: 80 HPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRPHITS 232
HP SR +N P V S V R+ SN V+ S PH+ S
Sbjct: 494 HPHVYSRVKSNHPHVYSRVRSNHPHVYSRVKSN-HPHVYSRVKSNHPHVYS 543
>SB_38098| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 503
Score = 27.5 bits (58), Expect = 4.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 128 SSPSETKDSVAQRLSSNPRSWVWK 199
S+ SE K SV +R + ++W+W+
Sbjct: 193 STRSELKSSVVERFNRTLKTWIWR 216
>SB_26480| Best HMM Match : EGF (HMM E-Value=0)
Length = 1772
Score = 27.1 bits (57), Expect = 5.9
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 316 RFQGTWWYHRTIRCWRTSPYGCPRR 242
RF+ WY R C R YGCP R
Sbjct: 1613 RFRPQAWYSRV--CLRAEVYGCPDR 1635
>SB_39041| Best HMM Match : rve (HMM E-Value=2.3e-10)
Length = 1164
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 128 SSPSETKDSVAQRLSSNPRSWVWK 199
S+ +ETK SV +R + + W+W+
Sbjct: 100 STKNETKASVVERFNRTFKGWMWR 123
>SB_28997| Best HMM Match : rve (HMM E-Value=2.3e-10)
Length = 1847
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +2
Query: 128 SSPSETKDSVAQRLSSNPRSWVWK 199
S+ +ETK SV +R + + W+W+
Sbjct: 902 STKNETKASVVERFNRTFKGWMWR 925
>SB_45953| Best HMM Match : LRR_1 (HMM E-Value=7.4e-15)
Length = 1427
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -3
Query: 274 WRTSPYGCPRRTS 236
W SPY CPRR S
Sbjct: 1115 WMCSPYNCPRRRS 1127
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,111,486
Number of Sequences: 59808
Number of extensions: 311212
Number of successful extensions: 1053
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 740151420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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