Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0254
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             235   2e-64
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   1.8  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   2.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   3.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   3.1  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.1  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  235 bits (574), Expect = 2e-64
 Identities = 110/112 (98%), Positives = 111/112 (99%)
 Frame = +1

Query: 73  TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNFIMKCDVD 252
           TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYN IMKCDVD
Sbjct: 4   TAASSSSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVD 63

Query: 253 IRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVW 408
           IRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPE+KYSVW
Sbjct: 64  IRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVW 115


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 77  LHPAAPSRSLTNFPTVRSSPSETKDSVAQRLSSNPRSWVWKLAASTRPHITSS 235
           L  AA + +  N+    +SPS T  S     SS   S   +  +S  P+++++
Sbjct: 43  LSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSSMYPYVSAA 95


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = +1

Query: 250 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVW 408
           DI++  Y + V      MYP  +  M+K I+    +  KI I  P E K  +W
Sbjct: 349 DIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITI--PKEMK--IW 397


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 279 RIVRWYHHVPWNRRPYAK 332
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 279 RIVRWYHHVPWNRRPYAK 332
           RI+ +YH    +++PY K
Sbjct: 424 RIIDYYHSYKMHQKPYNK 441


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +1

Query: 175 QPSFLGMEACGIHETTYNFIMKCDVDIRKDLYANTVL 285
           + +FLG+    +   +YN +   D  + KDL+   +L
Sbjct: 328 ETTFLGLIRLIVLNLSYNMLTHIDARMFKDLFFLQIL 364


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,739
Number of Sequences: 438
Number of extensions: 2838
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)