Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0252
         (662 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    22   5.2  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   6.8  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   6.8  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 10  FGTRARWSNRMKTSLLLFKNI*KCKEAHNT 99
           F T   + N++K  + L KN+ K  + HN+
Sbjct: 220 FPTELTFCNKIKHLVNLHKNLVKVAKDHNS 249


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 429 YQVIPVGLQNGLGVTSFNFSNPTVL 503
           YQV+P GL+  +G  SF+ +   VL
Sbjct: 424 YQVLPFGLKTAVG--SFSRAMDVVL 446


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = +2

Query: 596 WRLVSSHCFPLVCDS 640
           W +  SH FP   +S
Sbjct: 244 WHITDSHSFPFTAES 258


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,516
Number of Sequences: 336
Number of extensions: 3421
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)