Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0252
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    27   1.8  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    27   2.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   7.4  

>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 537 VSTTTLRNAYLNSGHYNFIAGDWSRLIVF-PWY 632
           ++T  LRN + N  HY+ ++G +    ++ PW+
Sbjct: 145 LATMPLRNIFKNCAHYHLLSGLFLAYFIYGPWH 177


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 5/62 (8%)
 Frame = +3

Query: 489 NPTVLYLMG-----FSESTRGVSTTTLRNAYLNSGHYNFIAGDWSRLIVFPWYVTAVRNT 653
           +P V YLM         S R  +   +R A++ S H NF  GD  R++ F     A   +
Sbjct: 347 SPAVTYLMACLLESHFMSIRKGALKAMRKAFM-SAHANFPCGDLKRILHFDTVEQAASFS 405

Query: 654 RY 659
           RY
Sbjct: 406 RY 407


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = -1

Query: 434  LVSCRIQSGEQLVLNVSGIITWTAMITLPHRG*HVPYFCYSYKK*GQFTN 285
            ++S + Q+  QL LNV   I+  + I + HRG +VP    S  K G   N
Sbjct: 1864 VISSQSQNISQL-LNVYDFISSHSDIFIEHRGRYVPILIDSLYKFGAIPN 1912


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,131
Number of Sequences: 5004
Number of extensions: 55972
Number of successful extensions: 78
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)