Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0252
         (662 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26408| Best HMM Match : Lipase (HMM E-Value=0)                      42   6e-04
SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)            30   1.5  
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    29   4.5  
SB_2178| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_38947| Best HMM Match : CD36 (HMM E-Value=1.4e-15)                  28   5.9  

>SB_26408| Best HMM Match : Lipase (HMM E-Value=0)
          Length = 714

 Score = 41.5 bits (93), Expect = 6e-04
 Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
 Frame = +3

Query: 381 STDIQYQLFTRLNPTRYQVIPVGLQNGLGVTSFNFSNPTVLYLMGFSESTRGVSTT---- 548
           S   Q+ L+TR +P +YQ +   +      T FN S  TV+ + GF+  T   S      
Sbjct: 70  SIHTQFMLYTRESPVQYQQLYEDMDITRD-THFNASRRTVIIIHGFAGFTTLTSIRHEVN 128

Query: 549 ----TLRNAYLNSGHYNFIAGDWSRLIVFPWYVTAVRNTR 656
                ++N  L  G +N I  DW R   FP +  AV NTR
Sbjct: 129 WWGFPMKNELLWEGDFNVIIVDWMRGAWFP-FTRAVANTR 167


>SB_21242| Best HMM Match : Prog_receptor (HMM E-Value=0.79)
          Length = 1091

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -1

Query: 224 GDFSSENTAHFTGTGYSSTD-YSGHIRNLNS 135
           GD+SS +    T  GY S D Y+ H+R+L+S
Sbjct: 553 GDYSSMDDQRLTDDGYYSKDSYANHLRSLSS 583


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 309 IGIAEIWYMSAPVGECD-HCCPRDDSTDIQYQLFTRLNPTRYQVIPVGLQN 458
           I +A IW +S+  G C+ H   RDD    ++  + + N    QV PVG++N
Sbjct: 425 IAVAFIWLLSSLKGNCEIHI--RDD----EFYPYVQFNLNDPQVSPVGIEN 469


>SB_2178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 53

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = +3

Query: 552 LRNAYLNSGHYNFIAGDWSRLIVFPWYVTAVRNTR 656
           ++N  L  G +N I  DW R   FP +  AV NTR
Sbjct: 19  MKNELLWEGDFNVIIVDWMRGAWFP-FTRAVANTR 52


>SB_38947| Best HMM Match : CD36 (HMM E-Value=1.4e-15)
          Length = 314

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +3

Query: 327 WYMSAPVGECDHCCPRDDS---TDIQYQLFTRLNPTRYQVIPVGL 452
           WY+  P   C  C P  DS    +I Y + T +  +  +++ VG+
Sbjct: 118 WYVFTPELSCSGCDPEADSVTTVNIAYAIMTEVAKSYSRIVRVGI 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,722,602
Number of Sequences: 59808
Number of extensions: 425719
Number of successful extensions: 902
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)