Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0252
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78545-2|CAB01766.1|  596|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z68106-8|CAA92125.2|  558|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z49153-3|CAD30426.1|  558|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U23448-8|AAL27226.1|  849|Caenorhabditis elegans Dnaj domain (pr...    27   9.0  
U23448-7|AAM81128.1|  868|Caenorhabditis elegans Dnaj domain (pr...    27   9.0  
U23448-6|AAL27225.1|  915|Caenorhabditis elegans Dnaj domain (pr...    27   9.0  
U23448-5|AAL27227.1|  912|Caenorhabditis elegans Dnaj domain (pr...    27   9.0  

>Z78545-2|CAB01766.1|  596|Caenorhabditis elegans Hypothetical
           protein M03B6.2 protein.
          Length = 596

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +3

Query: 513 GFSESTRGVSTTTLRNAYLNSGHYNFIAGDWSRLIVFPWYVT 638
           G +    G+ TT    A LN   ++F+ GDW + +V+   VT
Sbjct: 169 GIAVCGSGIGTTVF--ALLNDVVWDFVGGDWKQFLVYTAAVT 208


>Z68106-8|CAA92125.2|  558|Caenorhabditis elegans Hypothetical
           protein F41E7.2 protein.
          Length = 558

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 384 TDIQYQLFTRLNPTRYQVIPVGLQNGLGVTSFNFSNPTVLYLMG 515
           T++  ++   LNP     +P+ ++NG    S+  SN T  Y  G
Sbjct: 513 TNLNNRIIYELNPN---FVPISIENGYSRASYQHSNNTKTYASG 553


>Z49153-3|CAD30426.1|  558|Caenorhabditis elegans Hypothetical
           protein F41E7.2 protein.
          Length = 558

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 384 TDIQYQLFTRLNPTRYQVIPVGLQNGLGVTSFNFSNPTVLYLMG 515
           T++  ++   LNP     +P+ ++NG    S+  SN T  Y  G
Sbjct: 513 TNLNNRIIYELNPN---FVPISIENGYSRASYQHSNNTKTYASG 553


>U23448-8|AAL27226.1|  849|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform b
           protein.
          Length = 849

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 535 PLVDSENPIRYSTVGFEKLNEVTPKPFWRPTGITWYRVGFN-LVNNW 398
           P ++S  P R S+    ++ +  P P W  TG++      N L ++W
Sbjct: 171 PGLESFGPTRTSSTSSSQIYDAIPNPSWNYTGLSNINADSNVLFSDW 217


>U23448-7|AAM81128.1|  868|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform d
           protein.
          Length = 868

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 535 PLVDSENPIRYSTVGFEKLNEVTPKPFWRPTGITWYRVGFN-LVNNW 398
           P ++S  P R S+    ++ +  P P W  TG++      N L ++W
Sbjct: 171 PGLESFGPTRTSSTSSSQIYDAIPNPSWNYTGLSNINADSNVLFSDW 217


>U23448-6|AAL27225.1|  915|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform a
           protein.
          Length = 915

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 535 PLVDSENPIRYSTVGFEKLNEVTPKPFWRPTGITWYRVGFN-LVNNW 398
           P ++S  P R S+    ++ +  P P W  TG++      N L ++W
Sbjct: 171 PGLESFGPTRTSSTSSSQIYDAIPNPSWNYTGLSNINADSNVLFSDW 217


>U23448-5|AAL27227.1|  912|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform c
           protein.
          Length = 912

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 535 PLVDSENPIRYSTVGFEKLNEVTPKPFWRPTGITWYRVGFN-LVNNW 398
           P ++S  P R S+    ++ +  P P W  TG++      N L ++W
Sbjct: 170 PGLESFGPTRTSSTSSSQIYDAIPNPSWNYTGLSNINADSNVLFSDW 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,362,573
Number of Sequences: 27780
Number of extensions: 322063
Number of successful extensions: 678
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)