Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0252
         (662 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01540.1 68417.m00200 no apical meristem (NAM) family protein...    29   3.6  
At4g08390.2 68417.m01386 L-ascorbate peroxidase, stromal (sAPX) ...    28   4.8  
At4g08390.1 68417.m01385 L-ascorbate peroxidase, stromal (sAPX) ...    28   4.8  

>At4g01540.1 68417.m00200 no apical meristem (NAM) family protein
           similar to  NAC1 (GI:7716952) {Medicago truncatula};
           contains Pfam PF02365 : No apical meristem (NAM) protein
          Length = 423

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 517 NPIRYSTVGFEKLNEVTPKPFWRPTGI 437
           +PI Y+     K+   T   FW+PTG+
Sbjct: 68  SPIEYTNPNKMKMKRTTGSGFWKPTGV 94


>At4g08390.2 68417.m01386 L-ascorbate peroxidase, stromal (sAPX)
           identical to stromal ascorbate peroxidase [Arabidopsis
           thaliana] gi|1419388|emb|CAA67425
          Length = 372

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 416 ESDTIPGNTSWPPEWLRCD 472
           E    PG  SW PEWL+ D
Sbjct: 284 EGPGAPGGQSWTPEWLKFD 302


>At4g08390.1 68417.m01385 L-ascorbate peroxidase, stromal (sAPX)
           identical to stromal ascorbate peroxidase [Arabidopsis
           thaliana] gi|1419388|emb|CAA67425
          Length = 372

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +2

Query: 416 ESDTIPGNTSWPPEWLRCD 472
           E    PG  SW PEWL+ D
Sbjct: 284 EGPGAPGGQSWTPEWLKFD 302


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,265,628
Number of Sequences: 28952
Number of extensions: 289647
Number of successful extensions: 569
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)