Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0250
(421 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45) 183 5e-47
SB_19199| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.001
SB_3513| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.001
SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24) 31 0.39
SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.39
SB_33518| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.68
SB_39360| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_22093| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_33148| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-09) 27 6.3
SB_54602| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_55554| Best HMM Match : AAA (HMM E-Value=0.022) 27 8.3
SB_43749| Best HMM Match : Lipase_GDSL (HMM E-Value=0.077) 27 8.3
SB_38537| Best HMM Match : VWA (HMM E-Value=0) 27 8.3
SB_34106| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-10) 27 8.3
SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22) 27 8.3
>SB_39846| Best HMM Match : SIR2 (HMM E-Value=1.4013e-45)
Length = 427
Score = 183 bits (446), Expect = 5e-47
Identities = 84/119 (70%), Positives = 99/119 (83%)
Frame = +2
Query: 44 MADVEVEVPTNPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 223
M+D E + T +G MD+N ALQEVLKTALIH GL GLHEAAK+LDKR+A LC+L+
Sbjct: 1 MSDAEGDDTTQQPAAGGAMDINTALQEVLKTALIHDGLSRGLHEAAKSLDKREAHLCILS 60
Query: 224 ENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIK 400
NCDEA Y KLV+ALC EH IPL+KVD++KKLGEWAGLCKIDK+GKARK+VGCSCVV+K
Sbjct: 61 NNCDEAMYVKLVEALCAEHGIPLLKVDDSKKLGEWAGLCKIDKEGKARKVVGCSCVVVK 119
>SB_19199| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 68
Score = 39.1 bits (87), Expect = 0.001
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +2
Query: 191 DKRQAVLCVLAEN--CDEA--AYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 334
D LCVL EN D + +L++A C E+ IP+VKVD+++KL AG
Sbjct: 2 DPDDVTLCVLVENRHADPGIQVHCRLIEAFCWEYPIPVVKVDSSRKLKTIAG 53
>SB_3513| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 39.1 bits (87), Expect = 0.001
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +2
Query: 191 DKRQAVLCVLAEN--CDEA--AYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 334
D LCVL EN D + +L++A C E+ IP+VKVD+++KL AG
Sbjct: 2 DPDDVTLCVLVENRHADPGIQVHCRLIEAFCWEYPIPVVKVDSSRKLKTIAG 53
>SB_55500| Best HMM Match : Ribosomal_L7Ae (HMM E-Value=2.8e-24)
Length = 172
Score = 31.1 bits (67), Expect = 0.39
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 161 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 325
+G++ ++ ++A L V+A + D + ALC + Q+P V +LG+
Sbjct: 47 YGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGK 101
>SB_16903| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 31.1 bits (67), Expect = 0.39
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +2
Query: 161 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGE 325
+G++ ++ ++A L V+A + D + ALC + Q+P V +LG+
Sbjct: 138 YGINHITSLVENKKAQLVVIAHDVDPIEIVVWLPALCRKMQVPYCIVKGKARLGK 192
>SB_33518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 30.3 bits (65), Expect = 0.68
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -1
Query: 313 FVVVNLDQWNLMFVAQSLNKFLVCGFITVLSQNT*YCLPLVKSFSGFV 170
F VNL +W++ F A +L+++ +C F TV C V F F+
Sbjct: 256 FQAVNLSRWSMCFQAVNLSRWFMC-FQTVNLSRWFMCFQAVNLFRWFM 302
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = -1
Query: 331 SPFSKLFVVVNLDQWNLMFVAQSLNKFLVC 242
S +S F VNL +W + F A +L+++ +C
Sbjct: 178 SRWSMCFQTVNLSRWFMCFQAVNLSRWFMC 207
Score = 27.1 bits (57), Expect = 6.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 313 FVVVNLDQWNLMFVAQSLNKFLVC 242
F VNL +W + F A +L+++L+C
Sbjct: 112 FQAVNLSRWFMCFQAVNLSRWLMC 135
Score = 27.1 bits (57), Expect = 6.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 313 FVVVNLDQWNLMFVAQSLNKFLVC 242
F VNL +W + F A +L+++L+C
Sbjct: 196 FQAVNLSRWFMCFQAVNLSRWLMC 219
Score = 27.1 bits (57), Expect = 6.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -1
Query: 313 FVVVNLDQWNLMFVAQSLNKFLVC 242
F VNL +W + F A +L+++L+C
Sbjct: 316 FQAVNLSRWFMCFQAVNLSRWLMC 339
>SB_39360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 29.1 bits (62), Expect = 1.6
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 397 DDNTGAADNFPCLAILVNLAETSPFSKLF 311
DD +D +PC+ I+VN++ T +K F
Sbjct: 10 DDGLTCSDVYPCVEIMVNISSTGSETKKF 38
>SB_22093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 742
Score = 28.3 bits (60), Expect = 2.7
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
Frame = +2
Query: 167 LHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKK----LGEWAG 334
LH+ LD A + +L N + Q L P+ DN + + ++ G
Sbjct: 363 LHQRGVNLDTTTANMTILTSNIIQQLNNVSFQGLTG----PVSFTDNQRNGIIAIKQFQG 418
Query: 335 LCKIDKDGKARKIVGC 382
+ +DK K R ++GC
Sbjct: 419 MAPLDKPAKIRLVIGC 434
>SB_7961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1957
Score = 28.3 bits (60), Expect = 2.7
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = +2
Query: 149 GGLVHGLHEAAK--ALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQI 286
G L LHE +K +L R A+ C ++E + +++V N H I
Sbjct: 167 GSLHFVLHETSKEISLPDRVAIFCDVSEGLEFLKSRRIVHCFLNSHSI 214
>SB_33148| Best HMM Match : 7tm_1 (HMM E-Value=6.1e-09)
Length = 330
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 119 QEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLV 259
+ +L+ +G ++ L A + R LCV A CDE ++ LV
Sbjct: 70 KSLLQQPCPNGRVILSLAVADLCIGLRLEALCVFAARCDEMTWRVLV 116
>SB_54602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 450
Score = 26.6 bits (56), Expect = 8.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = -3
Query: 254 VSCMRLHHSSQPKHIVLLASCQEL*RLREDRAQDHHGLK 138
VSC +LH S+ KH LA E L E+ + LK
Sbjct: 358 VSCQKLHWSTHKKHCQRLAKEYEQELLMEEEIKRQEELK 396
>SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)
Length = 1681
Score = 26.6 bits (56), Expect = 8.3
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +2
Query: 110 VALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEA 241
+ E KT + GL + EA+++LDK Q L LA DEA
Sbjct: 1599 ICTTEKTKTGRLQSGLKR-IDEASRSLDKMQQELDQLAPVYDEA 1641
>SB_43749| Best HMM Match : Lipase_GDSL (HMM E-Value=0.077)
Length = 399
Score = 26.6 bits (56), Expect = 8.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 341 KIDKDGKARKIVGCSCVVIKDFG 409
++ KD K +K++ CV ++DFG
Sbjct: 214 RLGKDPKTKKVMNPECVNLEDFG 236
>SB_38537| Best HMM Match : VWA (HMM E-Value=0)
Length = 1174
Score = 26.6 bits (56), Expect = 8.3
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -1
Query: 406 EIFDDNTGAADNFPCLAILVNLAETSPFSKLF--VVVNLDQWNLMFVAQSLNKFLVCGFI 233
E F G P I++ A S S+ VVNLD+ N+ +A + GF+
Sbjct: 619 EFFQVKNGMRQGLPRFLIVLASANPSASSEAIESAVVNLDKENVRRIAVGFTEDATPGFL 678
Query: 232 TVLSQN 215
+L+ +
Sbjct: 679 RMLASD 684
>SB_34106| Best HMM Match : Acetyltransf_1 (HMM E-Value=1.1e-10)
Length = 262
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +2
Query: 224 ENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDG 358
E+ + Y ++ +L E Q PL+ V + + E LC + + G
Sbjct: 125 EDFTDLDYNTMMASLIGEEQPPLIAVSDTPAIMEVESLCSLIRGG 169
>SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)
Length = 1151
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/40 (32%), Positives = 18/40 (45%)
Frame = +1
Query: 253 TCSGSVQRTSDSTXXXXXXXKAWRMGWSLQD*QGWQGKEN 372
+C G V+R + T R+ +L D GWQG N
Sbjct: 218 SCVGIVERCNAPTVDLRRMCSCKRVTCTLDDWSGWQGTPN 257
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,416,572
Number of Sequences: 59808
Number of extensions: 299997
Number of successful extensions: 877
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -