Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0250
(421 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C) 147 3e-36
At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C) 147 3e-36
At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C) 147 3e-36
At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) simi... 142 7e-35
At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) simi... 142 7e-35
At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45... 32 0.14
At1g76780.1 68414.m08935 expressed protein ; expression supporte... 31 0.24
At1g58190.1 68414.m06605 leucine-rich repeat family protein cont... 31 0.32
At1g51920.1 68414.m05853 expressed protein 31 0.42
At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S ... 30 0.55
At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA) 30 0.55
At5g65130.1 68418.m08193 AP2 domain-containing transcription fac... 30 0.73
At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative / th... 29 1.3
At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger) fa... 28 3.0
At5g45640.1 68418.m05612 subtilase family protein contains Pfam ... 27 3.9
At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase / lon... 27 5.2
At1g77110.1 68414.m08981 auxin transport protein, putative simil... 27 5.2
At1g58350.1 68414.m06637 expressed protein contains Pfam profile... 27 5.2
At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containi... 27 6.8
At1g78700.1 68414.m09173 brassinosteroid signalling positive reg... 27 6.8
At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR... 26 9.0
At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR... 26 9.0
At5g43040.1 68418.m05254 DC1 domain-containing protein contains ... 26 9.0
At5g05930.2 68418.m00655 guanylyl cyclase-related (GC1) similar ... 26 9.0
At5g05930.1 68418.m00656 guanylyl cyclase-related (GC1) similar ... 26 9.0
At5g01180.1 68418.m00022 proton-dependent oligopeptide transport... 26 9.0
>At2g32060.3 68415.m03918 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 147 bits (356), Expect = 3e-36
Identities = 65/108 (60%), Positives = 86/108 (79%)
Frame = +2
Query: 95 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 274
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 275 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEET 418
+H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET
Sbjct: 84 DHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEET 131
>At2g32060.2 68415.m03917 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 147 bits (356), Expect = 3e-36
Identities = 65/108 (60%), Positives = 86/108 (79%)
Frame = +2
Query: 95 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 274
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 275 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEET 418
+H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET
Sbjct: 84 DHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEET 131
>At2g32060.1 68415.m03916 40S ribosomal protein S12 (RPS12C)
Length = 144
Score = 147 bits (356), Expect = 3e-36
Identities = 65/108 (60%), Positives = 86/108 (79%)
Frame = +2
Query: 95 NMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCN 274
+MDV+ AL+ ++ + +GG+V GLHE+AK ++KR A LCVLAE+C++ Y KLV+ALC
Sbjct: 24 DMDVSTALELTVRKSRAYGGVVRGLHESAKLIEKRNAQLCVLAEDCNQPDYVKLVKALCA 83
Query: 275 EHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEET 418
+H I L+ V + K LGEWAGLCKID +G ARK+VGCSC+VIKDFGEET
Sbjct: 84 DHSIKLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVIKDFGEET 131
>At1g15930.2 68414.m01912 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 142 bits (345), Expect = 7e-35
Identities = 68/125 (54%), Positives = 89/125 (71%), Gaps = 1/125 (0%)
Frame = +2
Query: 47 ADVEVEVPT-NPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 223
A V V P P +MD+ AL+ L+ A +GG+V GLHE AK ++KR A L VLA
Sbjct: 7 APVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLA 66
Query: 224 ENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKD 403
E+C++ Y KLV+ALC +H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KD
Sbjct: 67 EDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKD 126
Query: 404 FGEET 418
FGEET
Sbjct: 127 FGEET 131
>At1g15930.1 68414.m01911 40S ribosomal protein S12 (RPS12A) similar
to 40S ribosomal protein S12 GI:4263712 from
[Arabidopsis thaliana]
Length = 144
Score = 142 bits (345), Expect = 7e-35
Identities = 68/125 (54%), Positives = 89/125 (71%), Gaps = 1/125 (0%)
Frame = +2
Query: 47 ADVEVEVPT-NPILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLA 223
A V V P P +MD+ AL+ L+ A +GG+V GLHE AK ++KR A L VLA
Sbjct: 7 APVVVPPPVAEPAAIPEDMDLMTALELTLRKARAYGGVVRGLHECAKLIEKRVAQLVVLA 66
Query: 224 ENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKD 403
E+C++ Y KLV+ALC +H++ L+ V + K LGEWAGLCKID +G ARK+VGCSC+V+KD
Sbjct: 67 EDCNQPDYVKLVKALCADHEVRLLTVPSAKTLGEWAGLCKIDSEGNARKVVGCSCLVVKD 126
Query: 404 FGEET 418
FGEET
Sbjct: 127 FGEET 131
>At5g08180.1 68418.m00955 ribosomal protein L7Ae/L30e/S12e/Gadd45
family protein Similar to NHP2/L7Ae family proteins, see
SWISSPROT:P32495 and PMID:2063628.
Length = 156
Score = 32.3 bits (70), Expect = 0.14
Identities = 20/63 (31%), Positives = 30/63 (47%)
Frame = +2
Query: 155 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLGEWAG 334
L G+ E K++ + Q LCV+A N + LC E +P V V + + L + AG
Sbjct: 51 LKRGVKEVVKSIRRGQKGLCVIAGNISPIDVITHLPILCEEAGVPYVYVPSKEDLAQ-AG 109
Query: 335 LCK 343
K
Sbjct: 110 ATK 112
>At1g76780.1 68414.m08935 expressed protein ; expression supported by
MPSS
Length = 1871
Score = 31.5 bits (68), Expect = 0.24
Identities = 23/85 (27%), Positives = 41/85 (48%)
Frame = +2
Query: 125 VLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVD 304
V+K G L +GL + K + + + L E+ ++ +KK+ + P+++
Sbjct: 1364 VVKLVAEDGSLRNGLEFSEK--ESTVSKMLKLDESKEKEEHKKIRKPTEERSNAPVIEKQ 1421
Query: 305 NNKKLGEWAGLCKIDKDGKARKIVG 379
NKK E KID+ GK ++I G
Sbjct: 1422 GNKKNAEEEMQDKIDRRGKNQEIKG 1446
>At1g58190.1 68414.m06605 leucine-rich repeat family protein contains
leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 1784
Score = 31.1 bits (67), Expect = 0.32
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +2
Query: 128 LKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDN 307
LKT ++HG + G + ++ R L L++N + V L N H + + + +
Sbjct: 1008 LKTLILHGNNMEGTFPMKELINLRNLELLDLSKN----QFVGPVPDLANFHNLQGLDMSD 1063
Query: 308 NKKLGEWAGLCKI 346
NK G GLC++
Sbjct: 1064 NKFSGSNKGLCQL 1076
>At1g51920.1 68414.m05853 expressed protein
Length = 78
Score = 30.7 bits (66), Expect = 0.42
Identities = 19/49 (38%), Positives = 23/49 (46%)
Frame = -3
Query: 365 LPCHPCQSCRDQPILQAFCCCQP*PVESDVRCTEPEQVSCMRLHHSSQP 219
+P P S R PI A CC+P P+ S RC V+ HHS P
Sbjct: 33 IPRAPISSRR--PICPACVCCEPAPLGSCCRCCASPIVT-QTHHHSQSP 78
>At3g62870.1 68416.m07063 60S ribosomal protein L7A (RPL7aB) 60S
RIBOSOMAL PROTEIN L7A - Oryza sativa,
SWISSPROT:RL7A_ORYSA
Length = 256
Score = 30.3 bits (65), Expect = 0.55
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 161 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 322
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 128 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 181
>At2g47610.1 68415.m05940 60S ribosomal protein L7A (RPL7aA)
Length = 257
Score = 30.3 bits (65), Expect = 0.55
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +2
Query: 161 HGLHEAAKALDKRQAVLCVLAENCDEAAYKKLVQALCNEHQIPLVKVDNNKKLG 322
+GL+ +++ +A L V+A + D + ALC + ++P V +LG
Sbjct: 129 YGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKSRLG 182
>At5g65130.1 68418.m08193 AP2 domain-containing transcription
factor, putative similar to AP2 domain transcription
factor
Length = 277
Score = 29.9 bits (64), Expect = 0.73
Identities = 12/43 (27%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +2
Query: 257 VQALCNEHQIPLVKVDNNKKLGE-WAGLCKIDKDGKARKIVGC 382
++++CN +PL +++ K E +G K +K+ + +I GC
Sbjct: 187 IESICNSSDLPLPQIEKQNKTEEVLSGFSKPEKEPEFGEIYGC 229
>At1g17960.1 68414.m02222 threonyl-tRNA synthetase, putative /
threonine--tRNA ligase, putative similar to SP|O04630
Threonyl-tRNA synthetase, mitochondrial precursor (EC
6.1.1.3) (Threonine--tRNA ligase) (ThrRS) {Arabidopsis
thaliana}; contains Pfam profiles PF00587: tRNA
synthetase class II core domain (G, H, P, S and T),
PF03129: Anticodon binding domain, PF02824: TGS domain
Length = 458
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +2
Query: 188 LDKRQAVLCVLAENCDEAAYKKLVQALCNE 277
L RQA++C L+E+C ++Y K VQ NE
Sbjct: 355 LSPRQAIVCSLSEDC--SSYAKQVQKQINE 382
>At2g26000.1 68415.m03122 zinc finger (C3HC4-type RING finger)
family protein similar to BRCA1-associated protein 2
[Homo sapiens] GI:3252872; contains Pfam profiles
PF00097: Zinc finger, C3HC4 type (RING finger), PF02148:
Zn-finger in ubiquitin-hydrolases and other protein
Length = 461
Score = 27.9 bits (59), Expect = 3.0
Identities = 20/72 (27%), Positives = 25/72 (34%)
Frame = -3
Query: 359 CHPCQSCRDQPILQAFCCCQP*PVESDVRCTEPEQVSCMRLHHSSQPKHIVLLASCQEL* 180
C C+ C+ QP C CQ E+ C V C R +H C L
Sbjct: 203 CPVCRYCQQQPENSVCCVCQ--TTENLWMCVICGVVGCGRYKEGHARRHWEETEHCYSL- 259
Query: 179 RLREDRAQDHHG 144
L R D+ G
Sbjct: 260 ELETQRVWDYAG 271
>At5g45640.1 68418.m05612 subtilase family protein contains Pfam
domain, PF00082: Subtilase family; contains Pfam domain,
PF02225: protease associated (PA) domain
Length = 754
Score = 27.5 bits (58), Expect = 3.9
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -3
Query: 212 IVLLASCQEL*RLREDRAQDHHGLKLSLAP 123
+ LLASC + +LRE+RA +G L P
Sbjct: 18 VPLLASCTKEKQLREERASSINGFAAELTP 47
>At4g23850.1 68417.m03429 long-chain-fatty-acid--CoA ligase /
long-chain acyl-CoA synthetase nearly identical to
acyl-CoA synthetase (MF7P) from Brassica napus
[gi:1617270]
Length = 666
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -2
Query: 123 SCSATFTSMLLPDKMGLVGTSTSTSAMVVDYLTVLPRAEF 4
SC+ TF S LPD++G++GT V L +P E+
Sbjct: 423 SCAGTFVS--LPDELGMLGTVGPPVPNVDIRLESVPEMEY 460
>At1g77110.1 68414.m08981 auxin transport protein, putative similar
to auxin transport protein EIR1 GI:3377507 from
[Arabidopsis thaliana]
Length = 570
Score = 27.1 bits (57), Expect = 5.2
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -1
Query: 343 LAETSPFSKLFVVVNLDQWNLMFVAQSLNKFLVCGFITVLSQNT*YCLPLVKSFSG 176
LA+T SK+FV V L W + F A L+ + I L +PL+++ G
Sbjct: 73 LADT--LSKIFVFVLLSLWAVFFKAGGLDWLITLFSIATLPNTLVMGIPLLQAMYG 126
>At1g58350.1 68414.m06637 expressed protein contains Pfam profile
PF05057: Protein of unknown function (DUF676);
supporting cDNA gi|6520166|dbj|AB028199.1|
Length = 794
Score = 27.1 bits (57), Expect = 5.2
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +3
Query: 219 WLRTVMKPHTRNLFRLCATNIRFHWSRL 302
WL + K H +F L T + + W+ L
Sbjct: 327 WLHELSKDHLSRIFHLLGTQLHYLWNTL 354
>At2g02980.1 68415.m00250 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 603
Score = 26.6 bits (56), Expect = 6.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 308 NKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEE 415
NKK L K+ KD KA K+ GCS + + + E
Sbjct: 446 NKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHE 481
>At1g78700.1 68414.m09173 brassinosteroid signalling positive
regulator-related contains similarity to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 325
Score = 26.6 bits (56), Expect = 6.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -2
Query: 150 PWIKAVFSTSCSATFTSMLLPDKMGLVGTSTS 55
PW+K + +TS S+ +S LP+ + + G S S
Sbjct: 134 PWLKHLSTTSSSSASSSSRLPNYLYIPGGSIS 165
>At5g46520.1 68418.m05728 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1298
Score = 26.2 bits (55), Expect = 9.0
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +2
Query: 80 ILSGNNMDVNVALQEVLKTALIH 148
+L+ + +DVN+AL+ ++ +LIH
Sbjct: 495 LLADSGLDVNIALENLVDKSLIH 517
>At5g46510.1 68418.m05727 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1353
Score = 26.2 bits (55), Expect = 9.0
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +2
Query: 80 ILSGNNMDVNVALQEVLKTALIH 148
+L+ + +DVN+AL+ ++ +LIH
Sbjct: 456 LLADSGLDVNIALENLVDKSLIH 478
>At5g43040.1 68418.m05254 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 551
Score = 26.2 bits (55), Expect = 9.0
Identities = 20/92 (21%), Positives = 28/92 (30%)
Frame = -3
Query: 353 PCQSCRDQPILQAFCCCQP*PVESDVRCTEPEQVSCMRLHHSSQPKHIVLLASCQEL*RL 174
PC +C C C P +C +V C+ H + H+ L S +
Sbjct: 137 PCDACGVNDAKSCLCLCIPCRFTIHRKCVYLPRVICIN-RHDHRISHVPRLGSGNWSCGV 195
Query: 173 REDRAQDHHGLKLSLAPLAVLHSRPCCYPTRW 78
HG L +HSR W
Sbjct: 196 CRKEVNGMHGAFSCLTCTFAVHSRCAIRSNVW 227
>At5g05930.2 68418.m00655 guanylyl cyclase-related (GC1) similar to
guanylyl cyclase (GC1) GI:21436486 from [Arabidopsis
thaliana]; identical to cDNA putative guanylate cyclase
GI:21436486
Length = 210
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 80 ILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLC 214
+LSGN + + + Q+ L + + LV GLH + V+C
Sbjct: 111 LLSGNYIAIALVDQDKLSKSWLEEVLVSGLHSSNSCYTGHYVVIC 155
>At5g05930.1 68418.m00656 guanylyl cyclase-related (GC1) similar to
guanylyl cyclase (GC1) GI:21436486 from [Arabidopsis
thaliana]; identical to cDNA putative guanylate cyclase
GI:21436486
Length = 274
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +2
Query: 80 ILSGNNMDVNVALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLC 214
+LSGN + + + Q+ L + + LV GLH + V+C
Sbjct: 175 LLSGNYIAIALVDQDKLSKSWLEEVLVSGLHSSNSCYTGHYVVIC 219
>At5g01180.1 68418.m00022 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 570
Score = 26.2 bits (55), Expect = 9.0
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +2
Query: 224 ENCDEAAYKKLVQALCN--EHQIPLVKVDNNKKLGEWAGLC 340
E C+ AY + L N E Q+ + V +K + W+G C
Sbjct: 39 ECCERLAYYGMSTNLINYLEKQMNMENVSASKSVSNWSGTC 79
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,877,456
Number of Sequences: 28952
Number of extensions: 195349
Number of successful extensions: 598
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 587
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 645327280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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