Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0247
         (394 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.08c |smn1|yab8|SMN family protein Smn1|Schizosaccharomy...    26   1.8  
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    25   3.2  
SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    25   4.2  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    25   5.5  
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi...    25   5.5  
SPAC2F3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.7  

>SPAC2G11.08c |smn1|yab8|SMN family protein Smn1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 152

 Score = 26.2 bits (55), Expect = 1.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -3

Query: 386 IEPFGINLILKLQKPKEEEISRHNKFMSFNSPVRNLLH 273
           I+ F  N  L  +KP+      H +FM    P+R L +
Sbjct: 83  IQQFADNKGLSDEKPETRAAETHQEFMEVPPPIRGLTY 120


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 25.4 bits (53), Expect = 3.2
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
 Frame = +1

Query: 130  AL*ITLSFAYEMYVNKEILFVIKLRYLMYDYSVTWSSRNESMQIFKRL*RRFLT-GLLND 306
            A+   +S    +  N EIL  I     +Y+Y +  S +NES  + K + + + T G ++ 
Sbjct: 1123 AIGFNISVLVFVRANNEILTYINNFRRLYEYMLLPSEKNESSCLTKPMNKEWPTLGHVSI 1182

Query: 307  MNL-LCREISSSLGFCSFKIKLIPKGSIRL 393
             NL +   I  +       ++++PK  I +
Sbjct: 1183 KNLTVSYSIGQAAVLEDINLEILPKEKIAI 1212


>SPBC1921.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 4.2
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 368 NLILKLQKPKEEEISRHNKFMSFNSPVRNL 279
           NL L LQ  K  E+  H K ++   PVR L
Sbjct: 6   NLKLILQSKKLSELPTHRKSINMTIPVRAL 35


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +1

Query: 238 SRNESMQIFKRL*RRFLTGLLNDMNLLCREISSSLG 345
           SRNE+ Q    L   F+ GLL D  L   +  S LG
Sbjct: 133 SRNEATQAITTLKDLFIGGLLPDRKLKYMKQQSCLG 168


>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 615

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 211 MYDYSVTWSSRNESMQIFKRL*RRF 285
           + D S+ WS  NES+Q F  L ++F
Sbjct: 168 LLDLSIPWSFPNESLQQFIGLIQQF 192


>SPAC2F3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 23.8 bits (49), Expect = 9.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +1

Query: 40  LIRKPCSSDRATNEYQLEILTIVG 111
           L+R+  S+DR+  EY ++IL I G
Sbjct: 2   LVRENNSNDRSIIEYVIKILLISG 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,530,663
Number of Sequences: 5004
Number of extensions: 29148
Number of successful extensions: 74
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)