Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0247
         (394 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_14435| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.1  
SB_7704| Best HMM Match : DivIVA (HMM E-Value=9.6)                     27   4.1  
SB_17046| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_58468| Best HMM Match : rve (HMM E-Value=1.2e-11)                   27   7.2  
SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)                      27   7.2  
SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)               26   9.5  

>SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 788

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +1

Query: 283 FLTGLLNDMNLLCREISSSLGFCSFKIKLIPKGSI 387
           F    +   NLL  E+  S    SFK K+ P+GSI
Sbjct: 565 FFPRTIRTWNLLPSEVIESSSIDSFKSKVFPEGSI 599


>SB_14435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -2

Query: 51  FPYQEFRFFTCSPGDPL 1
           FP+  F   +CSPGDPL
Sbjct: 104 FPFNGFTSNSCSPGDPL 120


>SB_7704| Best HMM Match : DivIVA (HMM E-Value=9.6)
          Length = 163

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 64  RTNRVSVSGIPFFYLQPGGST 2
           R NR + +GI   +LQPGGST
Sbjct: 57  RKNRRTSAGISIEFLQPGGST 77


>SB_17046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -3

Query: 377 FGINLILKLQKPKEEEISRHNKFMSFNSPVRNLL 276
           FG+ L+   +KPKEE   +  K+ +F  P   LL
Sbjct: 253 FGVALLYFKRKPKEEIAEKGEKYETFLKPFLFLL 286


>SB_58468| Best HMM Match : rve (HMM E-Value=1.2e-11)
          Length = 257

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 67  RATNEYQLEILTIVGKYVEAEAL 135
           R T +Y L ++ +  +YV+AEAL
Sbjct: 12  RKTYKYALSVVDVASRYVDAEAL 34


>SB_16484| Best HMM Match : MSG (HMM E-Value=0.24)
          Length = 661

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = -3

Query: 203 LSFITNNISLF--TYISYAKLNVIYSASASTYLPTIVKISS*YSFVA 69
           L  I++NI L+  TY+ YA   V+Y+ +   Y  T V  ++ Y   A
Sbjct: 516 LRTISDNIPLYATTYVLYATTYVLYATTYVLYATTYVLYATTYVLYA 562


>SB_29958| Best HMM Match : Pkinase (HMM E-Value=2.6e-08)
          Length = 857

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 289 TGLLNDMNLLCREISSSLGFCSFKIKLIPKGSIR 390
           TG+L+D + + R  ++  G   FK+  + +GSIR
Sbjct: 171 TGVLSDNDTIERRDNTDSGIVVFKMPSVSEGSIR 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,871,695
Number of Sequences: 59808
Number of extensions: 195735
Number of successful extensions: 1280
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1280
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)