Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0247
         (394 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92782-2|CAB07188.1|  331|Caenorhabditis elegans Hypothetical pr...    29   1.2  
Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical pr...    28   2.1  
AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric c...    26   8.4  
AF022979-6|ABD94088.1|   94|Caenorhabditis elegans Hypothetical ...    26   8.4  
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ...    26   8.4  

>Z92782-2|CAB07188.1|  331|Caenorhabditis elegans Hypothetical
           protein F14F8.3 protein.
          Length = 331

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
 Frame = -3

Query: 215 YIKYLSFITNNISLFTYISYAKLNVIYSASASTYLPTIVKISS*YSFVARS---DEQGFR 45
           +  Y   ++   +L+    +  LN+I   SA  Y+P ++KI S ++ +A S     Q F 
Sbjct: 172 WANYQGSLSQIPTLYYLCYFIFLNIIQITSAILYIPMVMKIRS-FAHLASSRTYQPQNFI 230

Query: 44  IRNSVFLPAARGIH 3
           +  ++F+  ++  H
Sbjct: 231 LYQTLFISGSKSSH 244


>Z77132-6|CAB00861.3| 1406|Caenorhabditis elegans Hypothetical
           protein F54D1.5 protein.
          Length = 1406

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -3

Query: 350 QKPKEEEISRHNKFMSF-NSPVRNLLHKRLKICIDSFREDHVTL*SYIKYL 201
           ++ +EEE  R + F+   N+P  ++ +      I SFR DH++  S  K+L
Sbjct: 20  EEEEEEERHRTSSFLRLLNAPRNSMCNANTVHSISSFRSDHLSRKSTHKFL 70


>AF068721-5|AAC19259.1| 1475|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 1 protein.
          Length = 1475

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 365 LILKLQKPKEEEISRHNKFMSFNSPVRNLLHKRLKI 258
           L LKL++P EE+    +   + N+ +  L  K LK+
Sbjct: 298 LRLKLEEPDEEKNQLVHNLAALNAQIEELTQKALKV 333


>AF022979-6|ABD94088.1|   94|Caenorhabditis elegans Hypothetical
           protein T02B11.8 protein.
          Length = 94

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -2

Query: 78  ICCPIGRTGFPYQEFRFFTCSPG 10
           +CCPIG   +    F   TC PG
Sbjct: 39  VCCPIGNEQYGCCPFTGGTCCPG 61


>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
            protein Y39D8B.1 protein.
          Length = 1372

 Score = 26.2 bits (55), Expect = 8.4
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -1

Query: 355  NYKNLRRKKFHDII-NSCHSIVLLETFFINV*RSA*IHFGKTMSRCNHTSNISV 197
            NY+NLRR    DI+ N+ H +   E  F  V R      G+ + R  H  N  +
Sbjct: 1320 NYRNLRRNDIPDILENNIHQMAREEQAF-KVARQV----GRELMRTTHYKNFQI 1368


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,373,632
Number of Sequences: 27780
Number of extensions: 160181
Number of successful extensions: 335
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)