Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0247
         (394 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         25   0.31 
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   0.95 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   2.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   2.9  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   3.8  

>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 25.0 bits (52), Expect = 0.31
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = -3

Query: 362 ILKLQKPKEEEISRHNKFMSFNSPVRNLLHKRLKICIDSFREDHVTL 222
           I +L++ +EE I    + M  N P+  L H+R+   + S++   +++
Sbjct: 30  IYELRQIEEENIEPDTELMDSNEPLLPLRHRRVTCDVLSWQSKWLSI 76


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 0.95
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -1

Query: 355 NYKNLRRKKFHDIIN 311
           NYKN  +K +++IIN
Sbjct: 328 NYKNYNKKLYYNIIN 342


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 143 VIYSASASTYLPTIVKI 93
           +IYS+ +S Y+P I+ +
Sbjct: 344 IIYSSLSSFYIPCIIMV 360


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 143 VIYSASASTYLPTIVKI 93
           V+YSA  S Y+P +V +
Sbjct: 248 VVYSALGSFYIPMLVML 264


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 3.8
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 392 NLIEPFGINLILKLQK 345
           N++ P  IN++++LQK
Sbjct: 264 NIVRPDFINMLMELQK 279


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,293
Number of Sequences: 438
Number of extensions: 1842
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9638226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)