Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0246
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0333 + 16474011-16475478,16475622-16475641 161 5e-40
06_01_0080 + 644021-645463 149 2e-36
01_06_0663 - 30991390-30992340 41 0.001
02_04_0261 + 21363787-21363891,21364185-21364286,21365854-213659... 33 0.18
05_07_0134 - 27911920-27912762 31 0.74
01_05_0431 - 22084474-22084635,22084740-22084844,22084931-220850... 30 1.3
03_05_0556 - 25564025-25564274,25565244-25565470 29 2.3
12_01_0958 + 9542399-9542522,9542600-9542646 28 5.2
03_06_0273 + 32787021-32787434,32788096-32788221,32788305-327883... 28 5.2
02_01_0516 + 3727742-3727936,3729115-3729192,3729292-3729552,372... 28 5.2
10_08_0206 + 15809261-15809390,15810655-15810763,15811237-158112... 28 6.9
09_03_0052 + 11904633-11905616,11906324-11906491,11906588-11906977 28 6.9
06_03_1062 - 27293119-27293313,27293390-27293548,27293877-272941... 28 6.9
06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581... 28 6.9
04_01_0179 + 2021977-2024890,2025117-2025610 27 9.1
>11_04_0333 + 16474011-16475478,16475622-16475641
Length = 495
Score = 161 bits (390), Expect = 5e-40
Identities = 81/166 (48%), Positives = 109/166 (65%), Gaps = 2/166 (1%)
Frame = +3
Query: 120 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKN-EAKGT-KVIGATSLDDMVS 293
I L GLA MGQNL LN+ +KG+ + +NRT +KV+ + EA+G V+G V
Sbjct: 24 IGLAGLATMGQNLALNIAEKGFPISVYNRTAAKVDATVSRAEAEGALPVLGHRDPRGFVL 83
Query: 294 KLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGILY 473
L RPR +VLLV+AG AVD + L+P L GD I+DGGN Y +T++ +E + GILY
Sbjct: 84 SLSRPRTVVLLVQAGRAVDATIDALVPYLDAGDAIVDGGNEWYQNTERRIEEAAARGILY 143
Query: 474 VGMGVSGGEDGARYGPSLMPGGHPAAWPHIKEIFQAICAKANDEPC 611
+GMGVSGGE+GAR GPSLMPGGH A+ +I++I + A+ D C
Sbjct: 144 LGMGVSGGEEGARNGPSLMPGGHIDAYNNIRDILEKAAAQTEDGAC 189
>06_01_0080 + 644021-645463
Length = 480
Score = 149 bits (361), Expect = 2e-36
Identities = 77/167 (46%), Positives = 110/167 (65%), Gaps = 3/167 (1%)
Frame = +3
Query: 120 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKN-EAKGT-KVIGATSLDDMVS 293
I L GLAVMGQNL LN+ +KG+ + +NRT SKV+E ++ + +G V G V+
Sbjct: 6 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVQRAKVEGNLPVYGFHDPASFVN 65
Query: 294 KLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGILY 473
+++PR +++LVKAG VD+ + L L +GD IIDGGN Y +T++ K + G+LY
Sbjct: 66 SIQKPRVVIMLVKAGAPVDQTIATLAAHLEQGDCIIDGGNEWYENTERREKAMEERGLLY 125
Query: 474 VGMGVSGGEDGARYGPSLMPGGHPAAWPHIKEIFQAICAKANDE-PC 611
+GMGVSGGE+GAR GPSLMPGG A+ +I++I + A+ D PC
Sbjct: 126 LGMGVSGGEEGARNGPSLMPGGSFEAYKYIEDILLKVAAQVPDSGPC 172
>01_06_0663 - 30991390-30992340
Length = 316
Score = 40.7 bits (91), Expect = 0.001
Identities = 42/160 (26%), Positives = 66/160 (41%), Gaps = 7/160 (4%)
Frame = +3
Query: 120 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAKGTKVIGATSLDDMVSKL 299
+A +G VMGQ++ ++ GY + +NRT SK E + GAT + +
Sbjct: 22 VAWVGTGVMGQSMAGHLLAAGYALTVYNRTASKAEGLVSR--------GATLAESPRAAA 73
Query: 300 KRPRKIVLLVKAGFAVDEFVKKLIPL------LSKGDIIIDGGNSQYLDTQKWCKELSGT 461
I L+V GF D L P L+ G +++D S + + +
Sbjct: 74 AAADVIFLMV--GFPSDVRSTSLDPSTGALAGLAPGGLLVDMTTSDPTLAAEIAEAAAAK 131
Query: 462 GILYVGMGVSGGEDGARYGP-SLMPGGHPAAWPHIKEIFQ 578
V VSGG+ GAR S+ GG A + +F+
Sbjct: 132 SCAAVDAPVSGGDRGARSATLSIFAGGDAAVVARLAPLFK 171
>02_04_0261 +
21363787-21363891,21364185-21364286,21365854-21365964,
21366233-21366334,21366901-21367016,21367180-21367258,
21367347-21367517,21367617-21367712
Length = 293
Score = 33.1 bits (72), Expect = 0.18
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 117 DIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKV 221
++ +GL +MG+ + N+ G+ V +NRT+SKV
Sbjct: 2 EVGFLGLGIMGKAMAANLLRHGFRVTVWNRTLSKV 36
>05_07_0134 - 27911920-27912762
Length = 280
Score = 31.1 bits (67), Expect = 0.74
Identities = 32/135 (23%), Positives = 57/135 (42%), Gaps = 3/135 (2%)
Frame = +3
Query: 180 GYVVCAFNRTVSKVEEFLKNEAK--GTKVIGATSLDDMVSKLKRPRKIVLLVKAGFAVDE 353
G+ V A+ RT +K E + A G+ A + D + + + P + +V +
Sbjct: 9 GFAVTAYARTPAKAEALVAAGASLAGSPAAVAAACDVVFTMVGNPGDVRAVVL------D 62
Query: 354 FVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGILYVGMGVSGGEDGARYGP-SLM 530
++ L G +++D +S ++ G V VSGG+ GAR G +L+
Sbjct: 63 AASGVLAGLRPGGVLVDCTSSSPSLAREVAAAARAAGCYAVDSPVSGGDVGARDGALALL 122
Query: 531 PGGHPAAWPHIKEIF 575
GG A + +F
Sbjct: 123 AGGDEAVVSWLAPLF 137
>01_05_0431 -
22084474-22084635,22084740-22084844,22084931-22085003,
22085109-22085179,22085429-22085548,22085631-22085715,
22085812-22085867,22085978-22086053,22086546-22086611,
22086843-22087060
Length = 343
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +3
Query: 120 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAK 248
+ +GL +MG + N+ + G V +NRT SK + L AK
Sbjct: 53 VGFLGLGIMGAPMASNLINAGCDVTVWNRTRSKCDPLLSLGAK 95
>03_05_0556 - 25564025-25564274,25565244-25565470
Length = 158
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -3
Query: 451 NSLHHFCVSKYCELPPSIIISPLLKSGISFFTNSSTAN-PAFTKRTIFLG 305
NS H + LPP PLL + FFT+S++ P F KR + G
Sbjct: 28 NSSHPCKADEGSRLPPGSRGLPLLGESLEFFTSSTSLELPVFFKRRLNRG 77
>12_01_0958 + 9542399-9542522,9542600-9542646
Length = 56
Score = 28.3 bits (60), Expect = 5.2
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +2
Query: 512 IWTIFDAWWASCCMAA 559
+W + D W A CC+AA
Sbjct: 15 VWALLDGWIAVCCLAA 30
>03_06_0273 +
32787021-32787434,32788096-32788221,32788305-32788378,
32788468-32788537,32788622-32788677,32788762-32788833,
32788945-32789039,32789196-32789262,32789359-32789488,
32789578-32789793,32789887-32790017,32790719-32790893,
32790977-32791067,32792151-32792308,32792763-32792951,
32793066-32793125
Length = 707
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 405 GGNSQYLDTQKWCKELSGTGILYVGMGVSGGEDGARYGP 521
G + +Y+ +K K G G +YVG VSGG G+R GP
Sbjct: 142 GNSPEYITDRKLGK--GGFGQVYVGRRVSGG--GSRTGP 176
>02_01_0516 +
3727742-3727936,3729115-3729192,3729292-3729552,
3729921-3730238,3730527-3730685,3730768-3730961,
3731644-3731647
Length = 402
Score = 28.3 bits (60), Expect = 5.2
Identities = 22/83 (26%), Positives = 36/83 (43%)
Frame = +3
Query: 162 LNMNDKGYVVCAFNRTVSKVEEFLKNEAKGTKVIGATSLDDMVSKLKRPRKIVLLVKAGF 341
L +ND + + V +FLK G + LD +V + P+K + G
Sbjct: 144 LYVNDAFGTAHRAHASTEGVTKFLKPAVAG--FLMQKELDYLVGAVANPKKPFAAIVGGS 201
Query: 342 AVDEFVKKLIPLLSKGDIIIDGG 410
V + + LL+K D++I GG
Sbjct: 202 KVSTKIGVIESLLAKVDVLILGG 224
>10_08_0206 +
15809261-15809390,15810655-15810763,15811237-15811265,
15811721-15813048
Length = 531
Score = 27.9 bits (59), Expect = 6.9
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -3
Query: 394 ISPLLKSGISFFTNSSTANPAFTKRTIFLGLFSLDTMSSKEVAP 263
IS +++SG++ +TN + +NP + L L SS E+ P
Sbjct: 282 ISKVIESGLTSYTNRTVSNPGNADHILHLCHELLKPTSSAEMPP 325
>09_03_0052 + 11904633-11905616,11906324-11906491,11906588-11906977
Length = 513
Score = 27.9 bits (59), Expect = 6.9
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Frame = +3
Query: 48 NSMFKIVR*TFKI*LKKMPQNEADIALIGLAVMGQNL----ILNM-NDKGYVVCAFNRTV 212
N + K VR FK+ N DIA+ GL G L +L + G V + N V
Sbjct: 393 NELGKWVRKQFKVSGNSWDVNSKDIAIAGLGWFGIGLKGEAVLGLWTYDGVDVVSRNSLV 452
Query: 213 SKVEEFLKNEAKGTKVIGATSLDDMVSKLKRPRKI 317
+ + EA T + D M ++LK P+KI
Sbjct: 453 HE-RATIFEEAGFTVSKIVSQADSMANRLKNPKKI 486
>06_03_1062 -
27293119-27293313,27293390-27293548,27293877-27294194,
27294535-27294795,27294901-27294978,27295707-27295901
Length = 401
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = +3
Query: 276 LDDMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQY 422
LD +V + P+K + G V + + LL+K DI+I GG Y
Sbjct: 180 LDYLVGAVANPKKPFAAIVGGSKVSTKIGVIESLLAKVDILILGGGMIY 228
>06_03_0650 +
23157130-23157582,23157687-23157898,23157982-23158128,
23158214-23158347,23158442-23158551,23158711-23158817,
23159045-23159183,23159286-23159402,23159737-23159844,
23159927-23159998,23160108-23160230,23160336-23160495,
23160585-23160706,23160825-23160962,23161042-23161184,
23161305-23161367,23161567-23161630,23161709-23161844,
23162123-23162196,23162764-23162858,23162951-23162982,
23163104-23163276
Length = 973
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 384 KGDIIIDGGNSQYLDTQKWCKEL-SGTGILYVGMGVSGGEDGARYGPSLMPGGHPAAWPH 560
K ++ + G N+ LD W L S + G V+ E G PS+ WP
Sbjct: 664 KINVKMGGRNTVLLDAISWRIPLVSDIPTIIFGADVTHPETGEDSSPSIAAVVASQDWPE 723
Query: 561 IKEIFQAICAKAN 599
+ + +CA+A+
Sbjct: 724 VTKYAGLVCAQAH 736
>04_01_0179 + 2021977-2024890,2025117-2025610
Length = 1135
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 450 LSGTGILYV-GMGVSGGEDGARYGPSLMPGGHPAAWP 557
L GIL GMG+ GG+ G G S G AWP
Sbjct: 726 LGMVGILRARGMGIVGGKGGHGGGSSDSESGGDLAWP 762
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,605,393
Number of Sequences: 37544
Number of extensions: 331031
Number of successful extensions: 967
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -