Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0246
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    26   0.34 
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.0  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         24   1.4  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    24   1.4  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    24   1.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.2  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   5.5  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   5.5  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.3  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 408 GNSQYLDTQKWCKELSGTGILYVGM 482
           G+   L+TQ   K +S  G+L+VG+
Sbjct: 295 GSEDILNTQSLAKAVSKNGVLFVGL 319


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +2

Query: 503 WCTIWTIFDAW 535
           WC+IW   D W
Sbjct: 137 WCSIWLAVDVW 147


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 408 GNSQYLDTQKWCKELSGTGILYVGM 482
           G    LDTQ   K +S +G+L+ G+
Sbjct: 297 GVQNILDTQSSAKVVSKSGVLFFGL 321


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 408 GNSQYLDTQKWCKELSGTGILYVGM 482
           G    LDTQ   K +S +G+L+ G+
Sbjct: 297 GVQNILDTQSSAKVVSKSGVLFFGL 321


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 408 GNSQYLDTQKWCKELSGTGILYVGM 482
           G    LDTQ   K +S +G+L+ G+
Sbjct: 297 GVQNILDTQSSAKVVSKSGVLFFGL 321


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 399 IDGGNSQYLDTQKWCKELS 455
           ID  N+  LDT+KW  ++S
Sbjct: 371 IDEYNNNDLDTKKWNNKIS 389


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 149 THNSQTYECNISFILRHFFKLDFKSLSNY 63
           T  SQ Y   +S +L H F     S+S+Y
Sbjct: 478 TGTSQMYAEKLSELLGHAFHSQVLSMSDY 506


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = -2

Query: 575 ENFFYMRPCSRMPTRHQRWSISCTIFTSTYTH 480
           + FF     SR      RWSIS T+F     H
Sbjct: 149 QEFFPECKWSRKGFLRTRWSISGTVFDLINIH 180


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = -3

Query: 403 SIIISPLLKSGISFFTNSSTANPAFTKRTI 314
           ++  SPLL  G+ +      +NP + +  +
Sbjct: 267 NLYYSPLLSHGLYYVDTEQFSNPQYEENNV 296


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,220
Number of Sequences: 438
Number of extensions: 3256
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)