Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0246
(621 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g41670.2 68418.m05063 6-phosphogluconate dehydrogenase family... 164 5e-41
At5g41670.1 68418.m05062 6-phosphogluconate dehydrogenase family... 164 5e-41
At1g64190.1 68414.m07272 6-phosphogluconate dehydrogenase family... 160 8e-40
At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family... 154 5e-38
At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family... 154 5e-38
At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase NAD-bi... 42 3e-04
At3g25530.1 68416.m03174 6-phosphogluconate dehydrogenase NAD-bi... 38 0.005
At2g03270.1 68415.m00280 DNA-binding protein, putative similar t... 31 0.81
At3g06350.1 68416.m00733 dehydroquinate dehydratase, putative / ... 29 2.5
At1g71180.1 68414.m08213 6-phosphogluconate dehydrogenase NAD-bi... 28 4.3
At1g44820.1 68414.m05134 aminoacylase, putative / N-acyl-L-amino... 28 4.3
At5g47560.1 68418.m05871 sodium/dicarboxylate cotransporter, put... 28 5.7
At5g40510.1 68418.m04914 expressed protein 28 5.7
At1g56190.1 68414.m06458 phosphoglycerate kinase, putative simil... 28 5.7
At1g17650.1 68414.m02185 6-phosphogluconate dehydrogenase NAD-bi... 28 5.7
At5g09340.1 68418.m01082 ubiquitin, putative similar to ubiquiti... 27 7.6
At4g36430.1 68417.m05175 peroxidase, putative identical to perox... 27 7.6
At1g71170.1 68414.m08212 6-phosphogluconate dehydrogenase NAD-bi... 27 7.6
At1g54380.1 68414.m06200 spliceosome protein-related contains Pf... 27 7.6
>At5g41670.2 68418.m05063 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
Length = 487
Score = 164 bits (398), Expect = 5e-41
Identities = 83/167 (49%), Positives = 109/167 (65%), Gaps = 3/167 (1%)
Frame = +3
Query: 120 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFL---KNEAKGTKVIGATSLDDMV 290
I L GLAVMGQNL LN+ DKG+ + +NRT SKV+E L NE K V G S D V
Sbjct: 9 IGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLDRASNEGK-LPVAGQYSPRDFV 67
Query: 291 SKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGIL 470
++RPR +++LVKAG VD+ + L + GD IIDGGN Y +T++ E G+L
Sbjct: 68 LSIQRPRSVIILVKAGAPVDQTISALSEYMEPGDCIIDGGNEWYQNTERRIVEAEKKGLL 127
Query: 471 YVGMGVSGGEDGARYGPSLMPGGHPAAWPHIKEIFQAICAKANDEPC 611
Y+GMGVSGGE+GAR GPSLMPGG A+ ++K+I + + A+ D PC
Sbjct: 128 YLGMGVSGGEEGARNGPSLMPGGSFTAYNNVKDILEKVAAQVEDGPC 174
>At5g41670.1 68418.m05062 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
Length = 487
Score = 164 bits (398), Expect = 5e-41
Identities = 83/167 (49%), Positives = 109/167 (65%), Gaps = 3/167 (1%)
Frame = +3
Query: 120 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFL---KNEAKGTKVIGATSLDDMV 290
I L GLAVMGQNL LN+ DKG+ + +NRT SKV+E L NE K V G S D V
Sbjct: 9 IGLAGLAVMGQNLALNIADKGFPISVYNRTTSKVDETLDRASNEGK-LPVAGQYSPRDFV 67
Query: 291 SKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGIL 470
++RPR +++LVKAG VD+ + L + GD IIDGGN Y +T++ E G+L
Sbjct: 68 LSIQRPRSVIILVKAGAPVDQTISALSEYMEPGDCIIDGGNEWYQNTERRIVEAEKKGLL 127
Query: 471 YVGMGVSGGEDGARYGPSLMPGGHPAAWPHIKEIFQAICAKANDEPC 611
Y+GMGVSGGE+GAR GPSLMPGG A+ ++K+I + + A+ D PC
Sbjct: 128 YLGMGVSGGEEGARNGPSLMPGGSFTAYNNVKDILEKVAAQVEDGPC 174
>At1g64190.1 68414.m07272 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
Length = 487
Score = 160 bits (388), Expect = 8e-40
Identities = 81/166 (48%), Positives = 108/166 (65%), Gaps = 2/166 (1%)
Frame = +3
Query: 120 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEA-KGT-KVIGATSLDDMVS 293
I L GLAVMGQNL LN+ +KG+ + +NRT SKV+E L A +G V G S D V
Sbjct: 9 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETLDRAAVEGNLPVSGQYSPRDFVL 68
Query: 294 KLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGILY 473
++RPR +++LVKAG VD+ + + GD IIDGGN Y +T++ E G+LY
Sbjct: 69 SIQRPRSLIILVKAGAPVDQTIDAFSEYMEPGDCIIDGGNEWYQNTERRISEAEQKGLLY 128
Query: 474 VGMGVSGGEDGARYGPSLMPGGHPAAWPHIKEIFQAICAKANDEPC 611
+GMGVSGGE+GAR GPSLMPGG A+ +IK+I + + A+ D PC
Sbjct: 129 LGMGVSGGEEGARNGPSLMPGGSFQAYDNIKDILEKVAAQVEDGPC 174
>At3g02360.2 68416.m00220 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 154 bits (373), Expect = 5e-38
Identities = 77/167 (46%), Positives = 109/167 (65%), Gaps = 3/167 (1%)
Frame = +3
Query: 120 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAK--GTKVIGATSLDDMVS 293
I L GLAVMGQNL LN+ +KG+ + +NRT SKV+E ++ K + G + V
Sbjct: 8 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFHDPESFVK 67
Query: 294 KLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGILY 473
+++PR I++LVKAG VD+ +K L L KGD I+DGGN Y +T++ K ++ G LY
Sbjct: 68 SIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIVDGGNEWYENTERREKAVAENGFLY 127
Query: 474 VGMGVSGGEDGARYGPSLMPGGHPAAWPHIKEIFQAICAKANDE-PC 611
+GMGVSGGE+GAR GPS+MPGG A+ +I++I + A+ D PC
Sbjct: 128 LGMGVSGGEEGARNGPSMMPGGSYEAYKNIEDIVLKVAAQVRDSGPC 174
>At3g02360.1 68416.m00219 6-phosphogluconate dehydrogenase family
protein contains Pfam profiles: PF00393
6-phosphogluconate dehydrogenase C-terminal domain,
PF03446 NAD binding domain of 6-phosphogluconate
;similar to 6-phosphogluconate dehydrogenase GB:BAA22812
GI:2529229 [Glycine max]
Length = 486
Score = 154 bits (373), Expect = 5e-38
Identities = 77/167 (46%), Positives = 109/167 (65%), Gaps = 3/167 (1%)
Frame = +3
Query: 120 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAK--GTKVIGATSLDDMVS 293
I L GLAVMGQNL LN+ +KG+ + +NRT SKV+E ++ K + G + V
Sbjct: 8 IGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFHDPESFVK 67
Query: 294 KLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCKELSGTGILY 473
+++PR I++LVKAG VD+ +K L L KGD I+DGGN Y +T++ K ++ G LY
Sbjct: 68 SIQKPRVIIMLVKAGSPVDQTIKTLSAYLEKGDCIVDGGNEWYENTERREKAVAENGFLY 127
Query: 474 VGMGVSGGEDGARYGPSLMPGGHPAAWPHIKEIFQAICAKANDE-PC 611
+GMGVSGGE+GAR GPS+MPGG A+ +I++I + A+ D PC
Sbjct: 128 LGMGVSGGEEGARNGPSMMPGGSYEAYKNIEDIVLKVAAQVRDSGPC 174
>At4g29120.1 68417.m04168 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein similar to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 334
Score = 41.9 bits (94), Expect = 3e-04
Identities = 44/172 (25%), Positives = 74/172 (43%), Gaps = 6/172 (3%)
Frame = +3
Query: 102 PQNEADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFL---KNEAKGTKVIGAT 272
P N I IG VMG+++ ++ GY V FNRT+SK + + N A +
Sbjct: 35 PSN-TKIGWIGTGVMGRSMCGHLIKAGYTVTVFNRTISKAQTLIDMGANVADSPNSVAEQ 93
Query: 273 S--LDDMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWCK 446
S + +V R ++L K+G + L +G +++D S+ ++ K
Sbjct: 94 SDVVFTIVGYPSDVRHVLLDPKSG---------ALSGLRQGGVLVDMTTSEPSLAEEIAK 144
Query: 447 ELSGTGILYVGMGVSGGEDGARYGP-SLMPGGHPAAWPHIKEIFQAICAKAN 599
S + VSGG+ GA+ G S+ GG + +F ++ K N
Sbjct: 145 AASFKNCFSIDAPVSGGDLGAKNGKLSIFAGGDETTVKRLDPLF-SLMGKVN 195
>At3g25530.1 68416.m03174 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein low similarity to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase;
supporting cDNA gi|15375067|gb|AY044183.1|
Length = 289
Score = 37.9 bits (84), Expect = 0.005
Identities = 14/43 (32%), Positives = 29/43 (67%)
Frame = +3
Query: 117 DIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEA 245
++ +GL +MG+ + +N+ G+ V +NRT+SK +E +++ A
Sbjct: 2 EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGA 44
>At2g03270.1 68415.m00280 DNA-binding protein, putative similar to
Swiss-Prot:Q60560 DNA-binding protein SMUBP-2
(Immunoglobulin MU binding protein 2) (SMUBP-2) (Insulin
II gene enhancer-binding protein)(RIPE3B-binding complex
3B2 P110 subunit) (RIP-1)[Mesocricetus auratus];
identical to putative helicase (atpc-2 gene) cDNA
NCBI_gi:11191230
Length = 639
Score = 30.7 bits (66), Expect = 0.81
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = +3
Query: 195 AFNRTVSKVEEFLKNEAKGTKVIGATSLDDMVSKLKRPRKIVLLVKAGFAVDEFVKKLIP 374
A + +S + FL + GT T ++ ++ ++KR KI+ + AVD V++L+P
Sbjct: 197 AITKALSSKDVFLLHGPPGTGKT-TTVVEIVLQEVKRGSKILACAASNIAVDNIVERLVP 255
>At3g06350.1 68416.m00733 dehydroquinate dehydratase, putative /
shikimate dehydrogenase, putative similar to
dehydroquinate dehydratase/shikimate dehydrogenase
[Nicotiana tabacum][GI:535771], dehydroquinate
dehydratase/shikimate:NADP oxidoreductase [Lycopersicon
esculentum][GI:3169883]
Length = 603
Score = 29.1 bits (62), Expect = 2.5
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +3
Query: 102 PQNEADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAKGTKVIGATSLD 281
P + +IG G+ L +KG V NRT + E EA G K + T LD
Sbjct: 450 PLASKTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELA--EAIGGKALSLTDLD 507
Query: 282 D 284
+
Sbjct: 508 N 508
>At1g71180.1 68414.m08213 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein similar to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 318
Score = 28.3 bits (60), Expect = 4.3
Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 5/154 (3%)
Frame = +3
Query: 93 KKMPQNEADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAKGTKVIGA- 269
K + ++ I IG+ +MG ++ ++ GY V + R + K ++ + KG ++ +
Sbjct: 28 KLIDPSKTRIGWIGIGIMGSAMVSHIIAAGYSVTVYARDLRKTKDL---QTKGARIANSP 84
Query: 270 ---TSLDDMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKW 440
+ D+V + V + G D+ V + L+ G + +D +S+ ++
Sbjct: 85 KELAEMSDVVFTIVGNFNDVRSLLLG---DDGV---LSGLTPGGVTVDMTSSKPGLAREI 138
Query: 441 CKELSGTGILYVGMGVSGGEDGARYGP-SLMPGG 539
E V VSGG+ GAR G + GG
Sbjct: 139 HAEARRRNCWAVDAPVSGGDAGAREGTLGIFAGG 172
>At1g44820.1 68414.m05134 aminoacylase, putative /
N-acyl-L-amino-acid amidohydrolase, putative similar to
aminoacylase-1 (N-acyl-L-amino-acid amidohydrolase
ACY-1)[Homo sapiens] SWISS-PROT:Q03154
Length = 438
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/60 (33%), Positives = 30/60 (50%)
Frame = -3
Query: 340 NPAFTKRTIFLGLFSLDTMSSKEVAPITFVPLASFFRNSSTFDTVLLNAQTT*PLSFILS 161
+P IF +FSL + SS+E PIT F+ F+T N T P+SF+++
Sbjct: 4 SPLLWTLIIFSIIFSLQSSSSEEDTPIT------RFQQYLRFNTAHPNPNYTAPISFLIN 57
>At5g47560.1 68418.m05871 sodium/dicarboxylate cotransporter,
putative similar to SWISS-PROT:Q13183 renal
sodium/dicarboxylate cotransporter [Human]{Homo sapiens}
Length = 540
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +3
Query: 300 KRPRKIVLLVKAGFAVDEFVKK--LIPLLSKGDIIID 404
K P IVLL+ AGFA+ + V+ L +LSKG + ++
Sbjct: 387 KLPWNIVLLLGAGFAIADGVRTSGLAEVLSKGLVFLE 423
>At5g40510.1 68418.m04914 expressed protein
Length = 333
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/45 (28%), Positives = 18/45 (40%)
Frame = +3
Query: 480 MGVSGGEDGARYGPSLMPGGHPAAWPHIKEIFQAICAKANDEPCC 614
MG+ GGE + ++P GH K C +N CC
Sbjct: 236 MGLPGGEAEKVHEQKVIPNGHGVVKEESKGFTGGCCQGSNGVSCC 280
>At1g56190.1 68414.m06458 phosphoglycerate kinase, putative similar
to SP|P41758 Phosphoglycerate kinase, chloroplast
precursor (EC 2.7.2.3) {Chlamydomonas reinhardtii};
contains Pfam profile PF00162: phosphoglycerate kinase
Length = 478
Score = 27.9 bits (59), Expect = 5.7
Identities = 28/106 (26%), Positives = 45/106 (42%)
Frame = +3
Query: 93 KKMPQNEADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAKGTKVIGAT 272
K+ +NE D A LA + L +ND + + V +FLK G +
Sbjct: 197 KEEEKNEPDFAK-KLASLAD---LYVNDAFGTAHRAHASTEGVTKFLKPSVAGFLL--QK 250
Query: 273 SLDDMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGG 410
LD +V + P++ + G V + + LL K DI++ GG
Sbjct: 251 ELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKCDILLLGG 296
>At1g17650.1 68414.m02185 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein low similarity to
SP|P23523 2-hydroxy-3-oxopropionate reductase (EC
1.1.1.60) (Tartronate semialdehyde reductase)
{Escherichia coli}; contains Pfam profile PF03446: NAD
binding domain of 6-phosphogluconate dehydrogenase
Length = 343
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 120 IALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLKNEAK 248
I +G+ +MG + N+ G V +NRT SK + + AK
Sbjct: 54 IGFLGMGIMGSPMAQNLIKAGCDVTVWNRTKSKCDPLVGLGAK 96
>At5g09340.1 68418.m01082 ubiquitin, putative similar to ubiquitin
SP:P42740 from [Aglaothamnion neglectum]
Length = 79
Score = 27.5 bits (58), Expect = 7.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +3
Query: 252 TKVIGATSLDDMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGD 392
TK+ AT +++ L+ KIVL V G +D++ K + D
Sbjct: 28 TKIYDATGMENAYQYLEHRGKIVLEVHGGTTMDDYKIKACDIFHMSD 74
>At4g36430.1 68417.m05175 peroxidase, putative identical to
peroxidase [Arabidopsis thaliana]
gi|6822093|emb|CAB71009; identical to cDNA class III
peroxidase ATP31, GI:17530561
Length = 331
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 513 YGPSLMPGGHPAAWPHIKEIFQAICAKA 596
YG L PG + + P + EI +++ AKA
Sbjct: 26 YGGKLFPGYYAHSCPQVNEIVRSVVAKA 53
>At1g71170.1 68414.m08212 6-phosphogluconate dehydrogenase
NAD-binding domain-containing protein contains Pfam
profile: PF03446 NAD binding domain of
6-phosphogluconate
Length = 299
Score = 27.5 bits (58), Expect = 7.6
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 4/153 (2%)
Frame = +3
Query: 93 KKMPQNEADIALIGLAVMGQNLILNMNDKGYVVCAFNRTVSKVEEFLK---NEAKGTKVI 263
K + ++ I IG+ +MG ++ ++ GY V + R + K ++ A K +
Sbjct: 7 KLIEPSKTRIGWIGIGIMGSAMVSHILAAGYSVTVYARDLRKTKDLQTKGGRTANSPKEL 66
Query: 264 GATSLDDMVSKLKRPRKIVLLVKAGFAVDEFVKKLIPLLSKGDIIIDGGNSQYLDTQKWC 443
G + D+V + V + G D+ V + L G + +D +S+ ++
Sbjct: 67 G--EMSDVVFTIVGNSNDVRSLLLG---DDGV---LSGLKPGGVTVDMTSSKPGLAREIY 118
Query: 444 KELSGTGILYVGMGVSGGEDGARYGP-SLMPGG 539
E V VSGG+ GAR G ++ GG
Sbjct: 119 AEARRRDCWAVDAPVSGGDAGAREGKLTIFAGG 151
>At1g54380.1 68414.m06200 spliceosome protein-related contains Pfam
domain, PF04938: Survival motor neuron (SMN) interacting
protein 1 (SIP1)
Length = 515
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 207 TVSKVEEFLKNEAKGTKVIGATSLDDMVSKLKRP 308
T+ K+EE + N+ +++ T+L D+V KRP
Sbjct: 127 TLPKIEETMDNDVDKIELVDHTALVDVVHHPKRP 160
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,423,936
Number of Sequences: 28952
Number of extensions: 267655
Number of successful extensions: 702
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 697
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -