Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0245
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    24   6.5  
SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    23   8.6  
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    23   8.6  

>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 153 IVSCVSEFIKNNFIFKVSRNLKELI 227
           +++C S F + N I  V+RN    +
Sbjct: 100 VLACFSAFCETNLILAVARNFNRAV 124


>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 110 EII*NLIILKVNFIYCILCIRVY 178
           E I N  +L   F++C  CI+V+
Sbjct: 262 EKIKNPAVLSTGFVFCYPCIQVW 284


>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 211 LRETLKIKLFLINSDTQDTINKIY 140
           L + +K+ +FL + D    +NK+Y
Sbjct: 103 LNKIVKVNIFLADMDDFAAVNKVY 126


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 817,489
Number of Sequences: 5004
Number of extensions: 10033
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)