Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0242
         (657 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2ES49 Cluster: Putative uncharacterized protein; n=8; ...    35   2.0  
UniRef50_A4M8A0 Cluster: Phosphoribosylaminoimidazole-succinocar...    33   6.0  
UniRef50_Q22C31 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  

>UniRef50_A2ES49 Cluster: Putative uncharacterized protein; n=8;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 373

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
 Frame = -3

Query: 286 YHCNVKDYNYKSYTY-KQNT--NIINLTTIFPPGNKF 185
           + C  KDY   SYTY K NT  N++NLT+++  G+ +
Sbjct: 135 FKCYTKDYGKHSYTYVKTNTNKNVVNLTSLYQCGHDY 171


>UniRef50_A4M8A0 Cluster:
           Phosphoribosylaminoimidazole-succinocarboxamide
           synthase; n=1; Petrotoga mobilis SJ95|Rep:
           Phosphoribosylaminoimidazole-succinocarboxamide synthase
           - Petrotoga mobilis SJ95
          Length = 238

 Score = 33.1 bits (72), Expect = 6.0
 Identities = 23/59 (38%), Positives = 32/59 (54%)
 Frame = -3

Query: 382 RDQCCHKIKVPINKEI*STNIQFTGNKSINTHYHCNVKDYNYKSYTYKQNTNIINLTTI 206
           +DQ  +K K  INKEI     +   N+ INTHY   + DY+  S+  K  T++I L  I
Sbjct: 42  KDQILNKGK--INKEISKFFFEMLNNQGINTHY---INDYDENSFVAKW-TDLIPLEVI 94


>UniRef50_Q22C31 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 2416

 Score = 32.7 bits (71), Expect = 8.0
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -3

Query: 412 GNQRIEYQ*NRDQCCHKIKVPINKEI*STNIQFTGNKSINTHYHCNVKDYNYKSYTYKQN 233
           G+ R+++    D+C +     INKE  S N Q   N  +N H    + D N  +   KQN
Sbjct: 799 GHFRLDFSQEEDECDNDENKNINKEEKSINPQNKENSFLNNHLENELIDENVNNSFKKQN 858


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 523,282,231
Number of Sequences: 1657284
Number of extensions: 9425987
Number of successful extensions: 18542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18516
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 49586781480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)