Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0242
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c... 27 1.8
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 1.8
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 27 3.1
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 26 5.5
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos... 26 5.5
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 25 7.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 7.3
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51... 25 9.6
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 25 9.6
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc... 25 9.6
>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 521
Score = 27.5 bits (58), Expect = 1.8
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -3
Query: 376 QCCHKIKVPINKEI*STNIQFTGNKSINTHYHCNVKDYNYKSYTYKQNTNIINLTTI 206
+C H++ PI+K I S IQF + H +D Y YT + +N I+ I
Sbjct: 93 RCPHQVGKPISKGINSGRIQF-----FDKHLSMFPQDLLYGYYTRNRESNTIDTAII 144
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -3
Query: 352 PINKEI*STNIQFTGNKSINTHYHCNVKDYNYKS-YTYKQN 233
PI+K TNI+ SI + Y+ N+ DY+ ++ Y ++N
Sbjct: 3457 PISKSAVRTNIERCVQTSIESKYYKNLTDYSLENIYIIQEN 3497
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 26.6 bits (56), Expect = 3.1
Identities = 11/53 (20%), Positives = 27/53 (50%)
Frame = -3
Query: 253 SYTYKQNTNIINLTTIFPPGNKFV*FSLNWQQ*SRHFSFELKNCLRLILGHTS 95
++T + + +N +P G+K + + + ++ K C+R++ GHT+
Sbjct: 177 NFTLQAHDRGVNYVNYYPAGDKPYLITAGDDNLIKVWDYQTKACVRILEGHTN 229
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.8 bits (54), Expect = 5.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +1
Query: 598 ISEARGKFRTMLFMILYLY 654
+ EA+ KFR +LFMI LY
Sbjct: 392 LREAKDKFRLLLFMIRKLY 410
>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 980
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 90 EIDVCPNINRRQFFNSKEKCLDHCCQFKL 176
EI++ P+++RR+F E D C +L
Sbjct: 491 EIEIAPDMSRREFIRWMENIQDWCISRQL 519
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.4 bits (53), Expect = 7.3
Identities = 16/57 (28%), Positives = 24/57 (42%)
Frame = -3
Query: 397 EYQ*NRDQCCHKIKVPINKEI*STNIQFTGNKSINTHYHCNVKDYNYKSYTYKQNTN 227
+ Q + Q H+ P + + S N G + INT N NY+SY + N
Sbjct: 452 QQQQQQQQQLHRTSNPTSASVTSQN----GQQPINTKLSANAAKTNYQSYLTNKARN 504
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = -3
Query: 325 NIQFTGN--KSINTHYHCNVKDYNYKSYTYKQNTNIINLTTIFPPGN 191
N+Q T N K + T N+K+ N + Y IN + + PG+
Sbjct: 838 NLQRTANLYKPMTTPNAYNIKNSNQRETKYPYQPQAINYSEVTQPGS 884
>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +3
Query: 27 HENLHKYLVTAAVRYTNVCIFEIDVCPN 110
++N +Y V+ ++Y+NV + V PN
Sbjct: 121 NDNFRRYGVSGGIQYSNVPLINSRVTPN 148
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 9.6
Identities = 21/57 (36%), Positives = 28/57 (49%)
Frame = -2
Query: 179 IQLKLATMIKTLFFRVEKLSAIDIGAHVNLEYTNICITHSGCD*ILM*ILVQSILLC 9
+ L LAT LFF V+K+S I + AHV Y+N +S D I +L C
Sbjct: 307 VLLTLATHPDLLFFDVQKISWITL-AHV--VYSNARAQNSFVDSTFFDIKNTDVLTC 360
>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.0 bits (52), Expect = 9.6
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +1
Query: 382 DFIDTRCVDCLTRNVVRIRASLLTFYI 462
+F+ T C+DCL R V I+ S+ F +
Sbjct: 381 NFVRTNCMDCLDRTNV-IQTSIAQFIL 406
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,333,766
Number of Sequences: 5004
Number of extensions: 44486
Number of successful extensions: 82
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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