Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0242
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0983 - 9979572-9980570,9980878-9981544,9982864-9983217,998...    29   3.3  
12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311     28   7.5  
12_02_0807 - 23341971-23342153,23342300-23342397,23342451-233425...    27   9.9  
11_01_0702 - 5782202-5782277,5782692-5782760,5782878-5783026,578...    27   9.9  

>12_01_0983 -
           9979572-9980570,9980878-9981544,9982864-9983217,
           9983334-9983668
          Length = 784

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 169 NWQQ*SRHFSFELKNCLRLILGHTSISNIQT-FV*RTAAVTRYLC 38
           +W+   R  S+++++C+ L L   S SN +   V + AA  R LC
Sbjct: 68  DWRNKVRELSYDIEDCIDLFLHKVSSSNAKAGLVRKMAAKIRKLC 112


>12_01_0986 - 10009518-10009839,10009958-10011544,10012515-10013311
          Length = 901

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -3

Query: 169 NWQQ*SRHFSFELKNCLRLILGHTSISNIQT-FV*RTAAVTRYL 41
           +W+   R  S+++++C+ L L   S SN +   V +TAA  R L
Sbjct: 68  DWRNKVRELSYDIEDCIDLFLHKVSSSNAKAGLVRKTAAKIRKL 111


>12_02_0807 -
           23341971-23342153,23342300-23342397,23342451-23342521,
           23342522-23342634,23342853-23342943,23343037-23343272,
           23343915-23343959,23344113-23344226,23344306-23344369,
           23345036-23345059,23345320-23345483,23345598-23345795
          Length = 466

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 76  FV*RTAAVTRYLCRFSCNQFYCVP 5
           FV R  AVT + C ++C+ ++ VP
Sbjct: 353 FVNRHCAVTPFFCSYACHWYHTVP 376


>11_01_0702 -
           5782202-5782277,5782692-5782760,5782878-5783026,
           5783119-5783250,5783343-5783671,5784166-5784172
          Length = 253

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/60 (18%), Positives = 32/60 (53%)
 Frame = -3

Query: 277 NVKDYNYKSYTYKQNTNIINLTTIFPPGNKFV*FSLNWQQ*SRHFSFELKNCLRLILGHT 98
           N++   ++ +T   + +I++    F  GN+    + +W + ++ +  + + C++ + GHT
Sbjct: 115 NIRSSRHE-FTLSGHVSIVDCFDFFTRGNQLYMITGSWDKTAKIWDCQRRTCVQTLEGHT 173


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,054,531
Number of Sequences: 37544
Number of extensions: 222010
Number of successful extensions: 304
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)