Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0242
         (657 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical ...    28   6.7  
Z74039-3|CAA98502.1|  410|Caenorhabditis elegans Hypothetical pr...    27   8.9  

>U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical
           protein C18A3.9 protein.
          Length = 122

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +1

Query: 232 YFVYMYMIYNYNPSHCNDNVY*LIYYQ*TVYLSTRF 339
           +FV+MY I+    + CN+N+  LI+Y  +++   RF
Sbjct: 86  FFVFMYYIFLVLVNVCNNNL--LIFYYSSIFKRKRF 119


>AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical
           protein Y53C10A.9 protein.
          Length = 1564

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 84  IFEIDVCPNINRRQFFNSKEKCLDHCCQFKLN*TNLLPGGKIVVRFIMLVF 236
           IF +D CP       F     C  HC  F +  T++LP GK +V  +++++
Sbjct: 263 IFSMDNCPTYVLAGIF--MYTC--HCVSFSILCTSILPFGKRIVEGMVIIW 309


>Z74039-3|CAA98502.1|  410|Caenorhabditis elegans Hypothetical
           protein K03B8.3 protein.
          Length = 410

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -3

Query: 322 IQFTGNKSINTHYHCNVKDYNYKSYTYKQNTNIINLTTIF 203
           I++ G+  I    +C+    N KS+  K N  ++N+ T+F
Sbjct: 338 IKYMGDPRITNPIYCSADLINGKSFRSKLNPLLMNIHTLF 377


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,677,316
Number of Sequences: 27780
Number of extensions: 244411
Number of successful extensions: 445
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)