Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0242
         (657 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    26   0.36 
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    26   0.36 
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   1.9  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   3.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.5  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   5.9  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   5.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   7.8  

>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 295 NTHYHCNVKDYNYKSYTYKQNTNIINLTTIFPP 197
           N  Y+ N  +YN  +Y  K   NIIN+  I  P
Sbjct: 93  NYKYNYNNNNYNNNNYNKKLYYNIINIEQIPVP 125


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 25.8 bits (54), Expect = 0.36
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 295 NTHYHCNVKDYNYKSYTYKQNTNIINLTTIFPP 197
           N  Y+ N  +YN  +Y  K   NIIN+  I  P
Sbjct: 93  NYKYNYNNNNYNNNNYNKKLYYNIINIEQIPVP 125


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 262 NYKSYTYKQNTNIINLTTIFPP 197
           NYK+Y  K   NIIN+  I  P
Sbjct: 328 NYKNYNKKLYYNIINIEQIPVP 349


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -3

Query: 322 IQFTGNKSINTHYHCNVKDYNYKSYTYKQN 233
           I    NK+I  H + N  + NY +Y Y  N
Sbjct: 82  ISSLSNKTI--HNNNNYNNNNYNNYNYNNN 109


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -3

Query: 295 NTHYHCNVKDYNYKSYTYKQNTNIINLTTIFPP 197
           N +Y+ N  + NY +   K   NIIN+  I  P
Sbjct: 335 NNNYNNNNYNNNYNNNCKKLYYNIINIEQIPVP 367


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
 Frame = -3

Query: 268 DYNYKSYTYKQNT-----NIINLTTIFPP 197
           +YNYK+Y    N+     NIIN+  I  P
Sbjct: 308 NYNYKNYNNNYNSKKLYYNIINIEQIPVP 336


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
 Frame = -3

Query: 268 DYNYKSYTYKQNT-----NIINLTTIFPP 197
           +YNYK+Y    N+     NIIN+  I  P
Sbjct: 319 NYNYKNYNNNYNSKKLYYNIINIEQIPVP 347


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 268 DYNYKSYTYKQNTNIIN 218
           +YNY +  YK N N  N
Sbjct: 321 NYNYNNNNYKYNYNNYN 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,170
Number of Sequences: 438
Number of extensions: 3395
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)