Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0236
         (756 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6KIH6 Cluster: Putative amino acid permease; n=1; Myco...    37   0.47 
UniRef50_A5DHN4 Cluster: Putative uncharacterized protein; n=1; ...    35   1.9  
UniRef50_UPI00006CC2DC Cluster: hypothetical protein TTHERM_0066...    33   5.8  
UniRef50_Q18A73 Cluster: Putative membrane protein; n=1; Clostri...    33   7.6  

>UniRef50_Q6KIH6 Cluster: Putative amino acid permease; n=1;
           Mycoplasma mobile|Rep: Putative amino acid permease -
           Mycoplasma mobile
          Length = 538

 Score = 37.1 bits (82), Expect = 0.47
 Identities = 20/54 (37%), Positives = 31/54 (57%)
 Frame = +2

Query: 389 NNFALLGFVRKLDSV*NLDRILFSFVFVYMAFVFLIPLLEFIFKKFCEIMNRHI 550
           +N A LG   K +S+ N+D I+ +F+F  ++  FL+P + F   KF E  N  I
Sbjct: 453 SNSAGLGVFVKTNSIKNIDYIIMNFIF--LSIFFLLPTINFFLIKFFEKRNAFI 504


>UniRef50_A5DHN4 Cluster: Putative uncharacterized protein; n=1;
           Pichia guilliermondii|Rep: Putative uncharacterized
           protein - Pichia guilliermondii (Yeast) (Candida
           guilliermondii)
          Length = 251

 Score = 35.1 bits (77), Expect = 1.9
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = -1

Query: 660 FFYDPYHLSRKRFTTIIWFVFHVHIYMFPDTSVLVKSICLFIISQNFLKINSS 502
           FF+ P   SRK   ++    FH  IY   DTS+ +  I L ++++N  K+ S+
Sbjct: 136 FFFFPRLCSRKGSKSLTNLCFHRSIYFLVDTSMPISFISLELVAKNLSKLPSN 188


>UniRef50_UPI00006CC2DC Cluster: hypothetical protein
           TTHERM_00663880; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00663880 - Tetrahymena
           thermophila SB210
          Length = 1489

 Score = 33.5 bits (73), Expect = 5.8
 Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
 Frame = -3

Query: 436 SNTIKFSNKAQ*GEII---LI*ERNAYIAFKNSYSIKYTNALLNKMTVTKLGNFTRLWR* 266
           +NT K+ + +  G++     +   N YIAF N  +I + N+++N+ +   L   +  +  
Sbjct: 340 NNTGKYQDPSSSGQLFQYTTVQANNIYIAFNNLQNIFFFNSIINQQSQVDLSQESSTFIF 399

Query: 265 SNVPFITNY 239
           + V FI NY
Sbjct: 400 TQVQFIQNY 408


>UniRef50_Q18A73 Cluster: Putative membrane protein; n=1;
           Clostridium difficile 630|Rep: Putative membrane protein
           - Clostridium difficile (strain 630)
          Length = 148

 Score = 33.1 bits (72), Expect = 7.6
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
 Frame = -1

Query: 618 TIIWFVFHVHIYMFPDT---SVLVKSICLFIISQNFLKINSSRGIKKTKAMYTNTKLNKI 448
           T+IWF     I +F  +   S+ ++ +   +IS   L + + + +KK K   +NT L  +
Sbjct: 23  TLIWFSVGAVILIFLSSFIESIFLQILIFAVISIAMLVVATKKIVKKDKGYKSNTNLQAM 82

Query: 447 LSKFQTLSSFLTKPNKAKLF*YRRET 370
           +SK   ++  ++ PN   L     ET
Sbjct: 83  MSKKGIVTEEIS-PNNTGLVVVEHET 107


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 639,956,514
Number of Sequences: 1657284
Number of extensions: 12310007
Number of successful extensions: 30933
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 29113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30912
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 62558016040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)