Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0236
         (756 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical pro...    26   0.28 
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    24   1.5  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    22   6.1  

>AM712904-1|CAN84643.1|   86|Tribolium castaneum hypothetical
           protein protein.
          Length = 86

 Score = 26.2 bits (55), Expect = 0.28
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 662 VIHYCISILLLSHIKYFHPL 721
           +I  C+S  ++ ++K+FHPL
Sbjct: 33  IIAGCVSPFVIGYVKHFHPL 52


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = -1

Query: 666 ITFFYDPYHLSRKRFTTIIWFVF 598
           +  F  PY   R+    I+WF F
Sbjct: 134 VAMFIVPYFQDRREMPLIVWFPF 156


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 686 LLLSHIKYFHPLNTKT 733
           L L+H K FHP +T++
Sbjct: 250 LFLTHRKPFHPASTQS 265


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,092
Number of Sequences: 336
Number of extensions: 3709
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)