Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0236
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    27   2.9  
SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.0  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   5.0  
SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.7  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   8.8  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   8.8  

>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 695 SKAESKCSNESRFFTILIIYRENASPQLFGSYFTFIYT 582
           S+AE  C    +    L  YREN SP L+GS  + ++T
Sbjct: 139 SEAEKSCDFYGQ---PLHFYRENTSPCLYGSSLSNVFT 173


>SPCC1322.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 351

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
 Frame = -3

Query: 643 SFIEKTLHHNYLVRISRSYIHVP*HFCFSEINMSIHYFTK-----LFENKFK*GYQKNKS 479
           SF EK     Y +++  +      H    + N +IH FTK     +  +K K  Y    S
Sbjct: 27  SFAEKVQRFRYQMKVHAAPRQKTLHSFLKKDNANIHDFTKVEKPHIRSSKSKVSYNSITS 86

Query: 478 HVYEY-KTKQNSI 443
            V +Y + K NS+
Sbjct: 87  RVTKYFEEKNNSV 99


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 700 VTQKQNRNAVMNHVFLRSLSFIEKTLHHNYLVRISR 593
           + Q QNR  V N      + F+E +L  N+L+ ++R
Sbjct: 776 IAQGQNRGIVQNFGVQDEVLFLEISLTENWLIFVTR 811


>SPBC660.17c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +2

Query: 410 FVRKLDSV*NLDRILFSFVFVYMAFVFLIPLLEFIFKKF 526
           FV +L    N D  +FS +F ++  + ++PL  F++ ++
Sbjct: 32  FVEQLRLTNNRDNRMFSIIFSFLYLLLIVPL--FLYPEY 68


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 700 VTQKQNRNAVMNHVFLRSLSFIEKTLHHNYLVRISR 593
           + Q QNR  V N      + F++ +L  N+L+ I+R
Sbjct: 864 IAQGQNRGIVQNFGVQDEVLFLQISLTENWLIFITR 899


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 654 YDPYHLSRKRFTTIIWFV-FHVHIYMF 577
           Y PYH + K FT  IW + F +  +M+
Sbjct: 696 YTPYHPNEKLFTAGIWTIHFGLDNFMY 722


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,936,318
Number of Sequences: 5004
Number of extensions: 60345
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)