Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0236
         (756 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10971| Best HMM Match : DUF1378 (HMM E-Value=3.4)                   33   0.19 
SB_26556| Best HMM Match : DUF1378 (HMM E-Value=9.5)                   33   0.25 
SB_34427| Best HMM Match : DUF1378 (HMM E-Value=6.2)                   32   0.44 
SB_52270| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_10896| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_2398| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_9430| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.4  

>SB_10971| Best HMM Match : DUF1378 (HMM E-Value=3.4)
          Length = 228

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = -1

Query: 600 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKINSSRGIKKTKAMYTNTKLNKIL--SKFQ 433
           F   I M  DT ++ +SI  CLF++  NFLKI  +R  +K    +    LN  L    F 
Sbjct: 53  FAYDIEMRMDTKLIHESIVCCLFLVRGNFLKIERNRRHRKIFGKFAKKSLNFNLRPESFL 112

Query: 432 TLSSFLTKP 406
             S  L KP
Sbjct: 113 IHSKALEKP 121



 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = -1

Query: 600 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKINSSRGIKKTKAMYTNTKLN 454
           F   I M  DT ++ +SI  CLF++  NFLKI   R  +K    +    LN
Sbjct: 165 FAYDIEMRMDTKLIHESIVCCLFLVRGNFLKIERIRRHRKFFGKFAKKSLN 215


>SB_26556| Best HMM Match : DUF1378 (HMM E-Value=9.5)
          Length = 116

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 600 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKINSSRGIKKTKAMYTNTKLN 454
           F   I M  DT ++ +SI  CLF++  NFLKI  +R  +K    +    LN
Sbjct: 53  FAYDIEMRMDTKLIHESIVCCLFLVRGNFLKIERNRRHRKVFGKFAKKSLN 103


>SB_34427| Best HMM Match : DUF1378 (HMM E-Value=6.2)
          Length = 116

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -1

Query: 600 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKINSSRGIKKTKAMYTNTKLN 454
           F   I M  DT ++ +SI  CLF++  NFLKI  +R  +K    +    LN
Sbjct: 53  FAYDIEMRMDTKLVHESIVCCLFLVRGNFLKIERNRRHRKIFGKFAKKSLN 103


>SB_52270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 600 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKINSSRGIKKTKAMYTNTK 460
           F   I M  DT ++ +SI  CLF++  NFLKI  +R  +K    +   K
Sbjct: 33  FAYDIEMRMDTKLIHESIVCCLFLVRGNFLKIERNRRHRKIFGKFAKKK 81


>SB_10896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -3

Query: 739 LKRFSI*RVKIFYVTQKQNRNAVMNHVFLRSLSFIEKTLHHNYL 608
           LK  ++ RV + Y  Q  + N +M+HV  R LS   +  H N+L
Sbjct: 296 LKMLTLIRVPLSYRYQLVDVNTIMSHVHTRYLSRFTQKSHDNFL 339


>SB_2398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
 Frame = -1

Query: 600 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKINSSRGIKKTKAMYTNTK 460
           F   I M  DT ++ +SI  CLF++  NFLKI  +R  +K    +   K
Sbjct: 53  FAYDIEMRLDTKLIHQSIVCCLFLVRGNFLKIERNRRHRKIFGKFAKKK 101


>SB_9430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -1

Query: 612 IWFVFHVHIYMFPDTSVLVKSI--CLFIISQNFLKINSSRGIKKTKAMYTNTKLN 454
           I F + + ++M  DT ++ +SI  CLF+    FLKI  +R  +K    +    LN
Sbjct: 51  ISFAYDIEMHM--DTKLIHQSIVCCLFLARGIFLKIERNRRHRKIFGKFAKKSLN 103


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,520,106
Number of Sequences: 59808
Number of extensions: 371177
Number of successful extensions: 679
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 678
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)