Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NRPG0236
         (756 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28971-3|AAK68670.1|  319|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AC024788-4|ABE73331.1|  305|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z75712-2|CAB00041.1|  254|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF098993-7|ABN43095.1|  525|Caenorhabditis elegans Hypothetical ...    29   3.6  
AF098993-6|AAC67469.2|  562|Caenorhabditis elegans Hypothetical ...    29   3.6  
AF002197-1|AAB53982.1|  383|Caenorhabditis elegans Hypothetical ...    28   6.2  
AB275893-1|BAF34316.1|  383|Caenorhabditis elegans hypothetical ...    28   6.2  

>U28971-3|AAK68670.1|  319|Caenorhabditis elegans Hypothetical
           protein B0244.7 protein.
          Length = 319

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +2

Query: 113 YNNSYLLK*LFLIFAGNFCIGFYCINLNLYIFLLVLSQILKL 238
           YN   LL+  + IF    C+ F+ + LN+YIF +++  + K+
Sbjct: 40  YNIEMLLR--WAIFIIPCCMSFFALFLNIYIFYVLIPNLRKM 79


>AC024788-4|ABE73331.1|  305|Caenorhabditis elegans Hypothetical
           protein Y46E12A.4 protein.
          Length = 305

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 491 LIPLLEFIFKKFCEIMNRHIDFTKTEVS 574
           L P+LEF FK  CE +N  I  T   +S
Sbjct: 32  LFPILEFAFKGLCEHLNYKIGVTMEPIS 59


>Z75712-2|CAB00041.1|  254|Caenorhabditis elegans Hypothetical
           protein K04G2.4 protein.
          Length = 254

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/85 (21%), Positives = 35/85 (41%)
 Frame = -3

Query: 697 TQKQNRNAVMNHVFLRSLSFIEKTLHHNYLVRISRSYIHVP*HFCFSEINMSIHYFTKLF 518
           +  +N+N+      L+    +E+++HHN +     +          SE     HY   L 
Sbjct: 4   SHSKNKNSKSKSAILKKEHPLERSIHHNRVAHFDETQPTSQSTSVESEELNVKHYSKTLL 63

Query: 517 ENKFK*GYQKNKSHVYEYKTKQNSI 443
            +  +  +QK  +HV E   K+  +
Sbjct: 64  NDTVEPTHQKTSAHVPEKSIKKQEV 88


>AF098993-7|ABN43095.1|  525|Caenorhabditis elegans Hypothetical
           protein T10B11.7b protein.
          Length = 525

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = -3

Query: 649 SLSFIEKTLHHNYLVRISRSYIHVP*HFCF------SEINMSIHYF 530
           SL  I++  HH + V  S SY  V  HFC        E+N S++ F
Sbjct: 125 SLLPIQRPSHHTFCVFCSESYPPVEFHFCIFMTAAQKEVNQSVNEF 170


>AF098993-6|AAC67469.2|  562|Caenorhabditis elegans Hypothetical
           protein T10B11.7a protein.
          Length = 562

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
 Frame = -3

Query: 649 SLSFIEKTLHHNYLVRISRSYIHVP*HFCF------SEINMSIHYF 530
           SL  I++  HH + V  S SY  V  HFC        E+N S++ F
Sbjct: 162 SLLPIQRPSHHTFCVFCSESYPPVEFHFCIFMTAAQKEVNQSVNEF 207


>AF002197-1|AAB53982.1|  383|Caenorhabditis elegans Hypothetical
           protein F20H11.5 protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 722 LAGENILCDSKAESKCSNESRFFTILIIYRENASPQLFG 606
           L   +IL DSK +     ES + +++  YR+ A P+LFG
Sbjct: 105 LVSGHILSDSKTKLDSQRES-YGSLVYNYRDLAEPELFG 142


>AB275893-1|BAF34316.1|  383|Caenorhabditis elegans hypothetical
           protein protein.
          Length = 383

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 722 LAGENILCDSKAESKCSNESRFFTILIIYRENASPQLFG 606
           L   +IL DSK +     ES + +++  YR+ A P+LFG
Sbjct: 105 LVSGHILSDSKTKLDSQRES-YGSLVYNYRDLAEPELFG 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,549,087
Number of Sequences: 27780
Number of extensions: 317021
Number of successful extensions: 764
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)