Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0233
(344 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560... 136 6e-33
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706... 133 4e-32
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201... 27 3.0
10_01_0171 + 1917520-1918056,1919201-1919336,1921873-1922060,192... 27 5.2
06_03_0395 - 20354713-20355570 27 5.2
04_03_0674 + 18565426-18565487,18565591-18565696,18565856-185659... 27 5.2
10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519... 26 6.9
04_03_0498 + 16574250-16574312,16576576-16577457,16578624-165787... 26 6.9
03_02_0969 - 12795413-12795475,12795672-12795744,12796011-127961... 26 6.9
01_06_1031 - 33945681-33945822,33946502-33946641,33946748-339469... 26 6.9
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 26 9.1
07_01_1106 - 10187609-10190041,10190292-10191932 26 9.1
05_04_0367 - 20672776-20673550,20674097-20674320,20674626-206748... 26 9.1
05_04_0148 - 18426903-18427106,18430516-18430594,18430752-184309... 26 9.1
03_05_0961 - 29224548-29225125,29225286-29225308,29225736-292258... 26 9.1
>03_03_0207 -
15455163-15455389,15455623-15455895,15455991-15456099,
15456186-15456243,15457002-15457066,15457190-15457195
Length = 245
Score = 136 bits (328), Expect = 6e-33
Identities = 62/100 (62%), Positives = 77/100 (77%), Gaps = 2/100 (2%)
Frame = +2
Query: 50 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 229
MK N++ P TGCQK E+ D+ KLR FY+KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 230 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVR 343
FPMKQGVLT+ RVRLL+ +G C+R RRDGER+RKSVR
Sbjct: 61 FPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVR 100
>07_03_1309 +
25669394-25669399,25669520-25669584,25670543-25670600,
25670683-25670791,25670872-25671144,25671348-25671589
Length = 250
Score = 133 bits (321), Expect = 4e-32
Identities = 61/100 (61%), Positives = 76/100 (76%), Gaps = 2/100 (2%)
Frame = +2
Query: 50 MKLNVSYPATGCQKLFEVVDEHKLRIFYEKRMGAEVEADQLGDEWKGYVLRVAGGNDKQG 229
MK N++ P TGCQK E+ D+ KLR F++KR+ EV D LG+E+KGYV ++ GG DKQG
Sbjct: 1 MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60
Query: 230 FPMKQGVLTNSRVRLLMSKGHSCYR--PRRDGERKRKSVR 343
FPMKQGVLT RVRLL+ +G C+R RRDGER+RKSVR
Sbjct: 61 FPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVR 100
>01_07_0254 +
42318181-42319471,42319581-42319792,42319909-42320132,
42320232-42321009
Length = 834
Score = 27.5 bits (58), Expect = 3.0
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = +2
Query: 86 QKLF-EVVDEHKLRIFYEKRMGAEVEADQLG 175
+KL+ E+ DE KLRI YEK+ D+ G
Sbjct: 494 KKLYQEIKDEEKLRILYEKKYRRLKSLDERG 524
>10_01_0171 +
1917520-1918056,1919201-1919336,1921873-1922060,
1922491-1922694,1923913-1924425
Length = 525
Score = 26.6 bits (56), Expect = 5.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 194 VLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSC 298
VLR+ GND ++ G + NS + ++ + H C
Sbjct: 301 VLRIENGNDGSMITIQHGQVINSGIWIIKTPFHIC 335
>06_03_0395 - 20354713-20355570
Length = 285
Score = 26.6 bits (56), Expect = 5.2
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Frame = -1
Query: 269 EHGCLSGRPVSSGI-LACRCRQRHEVHSPSIHR 174
EH S P S L RC++RH +HS HR
Sbjct: 37 EHSATSPSPSSPRTRLFPRCQRRHRLHSHGRHR 69
>04_03_0674 +
18565426-18565487,18565591-18565696,18565856-18565922,
18566049-18566150,18566202-18566314,18566717-18566815,
18567251-18567318,18568264-18568477,18568929-18568984,
18569213-18569320,18569562-18569745,18569914-18570009
Length = 424
Score = 26.6 bits (56), Expect = 5.2
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +2
Query: 29 AGGIDAVMKLNVSYPATGC 85
AGGIDA +K++ +P + C
Sbjct: 349 AGGIDAFIKISADWPLSSC 367
>10_08_0570 +
18851451-18851723,18851894-18851928,18851929-18851998,
18852089-18852187,18852276-18852365,18852430-18852920,
18853015-18853102,18853204-18853245,18853548-18853574,
18853817-18853996,18854249-18854416,18854501-18854710
Length = 590
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 134 RKRYEACARPPLRTTSGIPLPGTKRL 57
R R RPP R++S +PLP R+
Sbjct: 251 RPRLSRRPRPPRRSSSPVPLPSPHRI 276
>04_03_0498 +
16574250-16574312,16576576-16577457,16578624-16578714,
16578802-16578857,16579527-16579640
Length = 401
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 211 RQRQARIPDET-GRPDKQPCSSSDVKG 288
R A + DET DK PC+S DV+G
Sbjct: 252 RTPNASVHDETVPNEDKTPCTSLDVRG 278
>03_02_0969 -
12795413-12795475,12795672-12795744,12796011-12796114,
12796374-12796493,12796591-12796683,12797813-12797911,
12798074-12798167,12798254-12798333,12798817-12799347
Length = 418
Score = 26.2 bits (55), Expect = 6.9
Identities = 14/25 (56%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Frame = -1
Query: 287 PLTSEDE---HGCLSGRPVSSGILA 222
PLT+E+E H CL GR S+ ILA
Sbjct: 185 PLTAEEENEVHNCLFGRGSSTEILA 209
>01_06_1031 -
33945681-33945822,33946502-33946641,33946748-33946995,
33947355-33947576,33948188-33948839
Length = 467
Score = 26.2 bits (55), Expect = 6.9
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +2
Query: 236 MKQGVLTNSRVRLLMSKGHSCYRPRRDGERK 328
++ + + R R+ M++GHS YRP G+ K
Sbjct: 432 IRDETMYDPRERIEMAQGHSLYRPSLLGQPK 462
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 104 VDEHKLRIFYEKRMGAEVEADQLGDEWKGYVL 199
++ + +RIF + + E + D + EW GY+L
Sbjct: 139 IEYYYIRIFENQDVEIEEKVDVIISEWMGYML 170
>07_01_1106 - 10187609-10190041,10190292-10191932
Length = 1357
Score = 25.8 bits (54), Expect = 9.1
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 5/63 (7%)
Frame = +2
Query: 167 QLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRV----RLLMSKGHS-CYRPRRDGERKR 331
Q GD++ GY +R G +K+ K V+T S V RL++ H+ CY PR +R
Sbjct: 52 QAGDDFSGYAVRGRGFVEKEHIFDK--VVTPSDVGNLGRLVIPWQHAECYFPRDVPANER 109
Query: 332 KSV 340
+ V
Sbjct: 110 EGV 112
>05_04_0367 -
20672776-20673550,20674097-20674320,20674626-20674843,
20675133-20676534
Length = 872
Score = 25.8 bits (54), Expect = 9.1
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 98 EVVDEHKLRIFYEKRMGAEVEADQLGDE 181
E+++E KLRI Y+K+ E D G E
Sbjct: 538 EIMEEEKLRITYDKQWKRLKELDDNGAE 565
>05_04_0148 -
18426903-18427106,18430516-18430594,18430752-18430935,
18431020-18431063,18432028-18432165,18432713-18434511
Length = 815
Score = 25.8 bits (54), Expect = 9.1
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -1
Query: 293 SGPLTSEDEHGCLSGRPVSSGILACRC 213
SG E EHG R V G LA RC
Sbjct: 366 SGAGEHEHEHGYYCSRAVEVGALAVRC 392
>03_05_0961 -
29224548-29225125,29225286-29225308,29225736-29225864,
29226533-29228217
Length = 804
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = -1
Query: 338 LIYVFSLHRGAVCNMSGPLTSEDEHGCLS-----GRPVSSGILACRCRQRHEVHSPSIHR 174
L+Y+F + G + + + E+E G S +++G+ C HE + P +HR
Sbjct: 504 LVYIF-VRNGDLSSALHRKSGEEEEGLQSLDWIKRLKIATGVAEALCYLHHECNPPMVHR 562
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,356,800
Number of Sequences: 37544
Number of extensions: 219898
Number of successful extensions: 720
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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