Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NRPG0233
(344 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) 121 1e-28
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) 38 0.002
SB_57151| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.3
SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8) 29 1.3
SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_40947| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.1
SB_37092| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.1
SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22) 27 5.4
SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05) 27 5.4
SB_34022| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.4
SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.1
SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 7.1
SB_37281| Best HMM Match : AMP-binding (HMM E-Value=3.78351e-44) 26 7.1
SB_49188| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.4
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026) 26 9.4
SB_47692| Best HMM Match : Ribosomal_S14 (HMM E-Value=7.4) 26 9.4
SB_30985| Best HMM Match : DUF1450 (HMM E-Value=1.5) 26 9.4
SB_30089| Best HMM Match : Ribosomal_S14 (HMM E-Value=7.4) 26 9.4
>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
Length = 212
Score = 121 bits (292), Expect = 1e-28
Identities = 52/64 (81%), Positives = 57/64 (89%)
Frame = +2
Query: 152 EVEADQLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 331
EV + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKR
Sbjct: 2 EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKR 61
Query: 332 KSVR 343
KSVR
Sbjct: 62 KSVR 65
>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
Length = 796
Score = 38.3 bits (85), Expect = 0.002
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -2
Query: 292 VAL*HQKTNTAVCQDALFHRESLLVVAASDTKYIALPFIA*LISLYFGAHALFVK 128
V L Q+ + A+ D L H +SL V+ SD + ++LP I + Y H L ++
Sbjct: 252 VTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306
>SB_57151| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 136
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 77 LPGTKRLTS*LRQSRLQPGDPLVLD 3
+P TKRL R++ PGDPLVL+
Sbjct: 1 MPKTKRLAPKKRRAWKSPGDPLVLE 25
>SB_7395| Best HMM Match : SURF6 (HMM E-Value=1.8)
Length = 1365
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = +2
Query: 158 EADQLGDEWKGYVL--RVAGGNDKQGFPMK 241
E D+ G EW+G+V G D QG+ MK
Sbjct: 815 EEDRTGQEWEGHVCDKEPEGKRDNQGYKMK 844
>SB_20469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 302 CNMSGPLTSEDEHGCLSGRPVSSGILACR 216
C S L +E GC S RP+ SG +CR
Sbjct: 105 CTSSAVLPAEKGGGCTSARPIRSG--SCR 131
>SB_40947| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.5 bits (58), Expect = 3.1
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -1
Query: 125 YEACARPPLRTTSGIPLPGTKRLTS*LRQSRLQPGDPLVLD 3
Y+ C P L T+ + P + + + PGDPLVL+
Sbjct: 8 YKPCLIPSLHTSQALHHPFIQAKPYNIPSNSCSPGDPLVLE 48
>SB_37092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 161
Score = 27.1 bits (57), Expect = 4.1
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 128 FYEKRMGAEVEADQLGDEWKGYVL-RVAGGNDKQG 229
FY K++ ++ L +EW+ +V +A G DK G
Sbjct: 10 FYNKKLEDYMKNTSLNEEWQDWVRHNIAAGCDKNG 44
>SB_52725| Best HMM Match : WD40 (HMM E-Value=2.1e-22)
Length = 874
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 211 RQRQARIPDETGRPDKQPCSSSDVK 285
+ R+ RIP +T PD Q S ++K
Sbjct: 80 KSREIRIPTDTTNPDPQMIESQEIK 104
>SB_34068| Best HMM Match : rve (HMM E-Value=5.7e-05)
Length = 1081
Score = 26.6 bits (56), Expect = 5.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 179 HRLTDQPLLRRPCAFRKRYEACARPPLRTTSGIPLP 72
H ++ + L RR A R+ ACAR P ++ P+P
Sbjct: 698 HFMSCKTLGRRSLASRRDARACARAPKMPSAHTPVP 733
>SB_34022| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 26.6 bits (56), Expect = 5.4
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -2
Query: 160 LYFGAHALFVKDTKL-VLVHHFEQLLASRCRVRN 62
LY+ H +F + VL H+ + L R R+RN
Sbjct: 72 LYYATHPVFFSSRAVYVLTHNLSKNLGYRARIRN 105
>SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2286
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 232 PDETGRPDKQPCSSSDVKGP 291
P E G P+K P + SD GP
Sbjct: 1666 PSELGSPEKSPFADSDPVGP 1685
>SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1441
Score = 26.2 bits (55), Expect = 7.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 232 PDETGRPDKQPCSSSDVKGP 291
P E G P+K P + SD GP
Sbjct: 1356 PSELGSPEKSPFADSDPVGP 1375
>SB_37281| Best HMM Match : AMP-binding (HMM E-Value=3.78351e-44)
Length = 393
Score = 26.2 bits (55), Expect = 7.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +2
Query: 20 PRAAGGIDAVMKLNVSYPATGCQKLFEVVDEHKLRIFY 133
P A G I + + YP C + +++VD++K+ FY
Sbjct: 80 PMANGAISVLFEGTPFYP--DCGRFWDIVDKYKVSKFY 115
>SB_49188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 716
Score = 25.8 bits (54), Expect = 9.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 158 LLRRPCAFRKRYEACARPPLRTTSGIPLP 72
L RR A R+ +ACAR P ++ P+P
Sbjct: 596 LSRRSLASRRDAKACARAPKMPSAHTPVP 624
>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
Length = 3342
Score = 25.8 bits (54), Expect = 9.4
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 197 VHSPSIHRLTDQPLLRRPCAFRKRYEACARPPLRTTS 87
++ P+IH T +PL RP FR+ + A + +T+
Sbjct: 2683 IYGPTIHIHTIKPLSARPQVFRQPERSDAHENMSSTA 2719
>SB_47692| Best HMM Match : Ribosomal_S14 (HMM E-Value=7.4)
Length = 162
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 223 ARIP-DETGRPDKQPCSSSDVKGPLMLQTAPRWREKT 330
AR+P T +P QP S S + +AP+WR T
Sbjct: 53 ARVPCGVTRQPASQPASQSVSRATPRPYSAPKWRLNT 89
>SB_30985| Best HMM Match : DUF1450 (HMM E-Value=1.5)
Length = 599
Score = 25.8 bits (54), Expect = 9.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -3
Query: 129 KIRSLCSSTTSNNFWHPVAGYETFNFMTAS 40
K+R S W P+A ++T NF+ S
Sbjct: 173 KLREFAVKICSGFAWKPIANFQTRNFILTS 202
>SB_30089| Best HMM Match : Ribosomal_S14 (HMM E-Value=7.4)
Length = 119
Score = 25.8 bits (54), Expect = 9.4
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 223 ARIP-DETGRPDKQPCSSSDVKGPLMLQTAPRWREKT 330
AR+P T +P QP S S + +AP+WR T
Sbjct: 10 ARVPCGVTRQPASQPASQSVSRATPRPYSAPKWRLNT 46
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,422,095
Number of Sequences: 59808
Number of extensions: 236834
Number of successful extensions: 971
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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